Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0224
(768 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 29 0.054
AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase prot... 25 0.50
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 24 1.5
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 8.2
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 8.2
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 8.2
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 8.2
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 21 8.2
AM292336-1|CAL23148.2| 455|Tribolium castaneum gustatory recept... 21 8.2
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 28.7 bits (61), Expect = 0.054
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +2
Query: 116 DANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGL--DN 289
D +G + + CK G P VTWK T VS G + N + ++
Sbjct: 707 DKAFAQGSDAAVECKADGFPRPVVTWK-------RATGVSP--GDYKDFKPNNPDIKVED 757
Query: 290 TVLVLQNAERADAGLYQCSPAGG 358
L + N ++ + G Y C G
Sbjct: 758 GTLTINNIQKTNEGYYLCEAVNG 780
Score = 27.9 bits (59), Expect = 0.094
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 107 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLD 286
M K A +V G + + C G P V W ++D G ++ + + ++
Sbjct: 517 MEKQA-IVAGGTLIVHCPFAGHPVDSVVW--ERD------------GRQLPINRKQKVFI 561
Query: 287 NTVLVLQNAERA-DAGLYQC 343
N L+++N ERA D Y C
Sbjct: 562 NGTLIIENVERASDQATYDC 581
Score = 26.6 bits (56), Expect = 0.22
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Frame = +2
Query: 116 DANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTV 295
+ V G ++ + C G P E+TW+ L N +G V + + N
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSE--RNQIGQYVTVNGDVVSHLNIT 479
Query: 296 LVLQNAERADAGLYQC---SPAGGTPADVTLRVKGV 394
+ N D GLY+C S G + V G+
Sbjct: 480 AIHTN----DGGLYRCVASSKVGSADHSARINVYGL 511
Score = 22.6 bits (46), Expect(2) = 0.16
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 86 TGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEVTWKYKKDELDNGTDV 232
T + AK+ ++ G+ TC G P ++W +D+ V
Sbjct: 325 TAPLKAKIEPQVQTIDFGRPATFTCNFEGNPIKTISWLKDGHPIDHNEAV 374
Score = 22.6 bits (46), Expect(2) = 0.16
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 284 DNTVLVLQNAERADAGLYQC 343
+ VL +++ + D G+YQC
Sbjct: 371 NEAVLRIESVRKEDKGMYQC 390
>AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase
protein.
Length = 590
Score = 25.4 bits (53), Expect = 0.50
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 240 TALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILAC 97
+AL SV + S L H T E+ LP+ L + CP L + L C
Sbjct: 345 SALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDC 392
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 23.8 bits (49), Expect = 1.5
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = -1
Query: 330 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTA----------LTSVPLSNSSFLYFHVTS 181
P+S + STS S +SC+ +P+TA TS P +++S ++ H TS
Sbjct: 81 PSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDNSHVHHHQTS 140
Query: 180 EYG 172
G
Sbjct: 141 LLG 143
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 445 EHHDLRADAEEGPERVVHALDPE 377
+HH L A EEG + + D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 445 EHHDLRADAEEGPERVVHALDPE 377
+HH L A EEG + + D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 445 EHHDLRADAEEGPERVVHALDPE 377
+HH L A EEG + + D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 21.4 bits (43), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 445 EHHDLRADAEEGPERVVHALDPE 377
+HH L A EEG + + D E
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSE 1196
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 664 IRSVVXSKMKCIKNYVED*SLV 729
IR V+ +KC+ NY + S +
Sbjct: 469 IRKVLEFDVKCVSNYTKQQSKI 490
>AM292336-1|CAL23148.2| 455|Tribolium castaneum gustatory receptor
candidate 15 protein.
Length = 455
Score = 21.4 bits (43), Expect = 8.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Frame = -1
Query: 291 VLSRPCSFFSSCTRL------PSTAL--TSVPLSNSSFLYFHVTSEYGL 169
+L R S F SCTRL PS + + +P+ N F VT E L
Sbjct: 398 ILLRFLSVFESCTRLNNESRKPSFVIQFSHIPVDNIEFAGALVTYELTL 446
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,891
Number of Sequences: 336
Number of extensions: 2584
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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