Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0224
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 31 1.3
08_02_0574 - 18867623-18868033,18869751-18870209 30 2.3
04_04_1654 - 35075409-35075926,35076396-35078694 29 3.1
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 29 3.1
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 29 4.1
07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038 29 4.1
01_06_0918 + 32990106-32992196 29 4.1
06_03_1248 + 28685911-28687719 29 5.4
03_06_0145 - 31973924-31975837 29 5.4
03_05_0553 - 25499260-25499311,25499670-25499899 29 5.4
09_02_0357 + 7788946-7789326,7789620-7789997 28 7.1
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946... 28 7.1
08_01_0955 + 9478018-9478773 28 7.1
03_06_0436 - 33910321-33910851 28 7.1
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664... 28 7.1
02_01_0004 + 33108-33752 28 7.1
04_03_0703 - 18870287-18871351,18871542-18871733 28 9.4
03_01_0020 + 180963-181346,181432-181994,183000-183822 28 9.4
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 28 9.4
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 254 VQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPFLGICAE 433
+QLE+ QG D + L+ + A+ G D RVK + P + CA+
Sbjct: 83 LQLEEKNQGCDASALISSPNDDAEKDAPDNMSLAGDGFDTVNRVKTAVEKACPGVVSCAD 142
Query: 434 VVVLCA 451
++ L A
Sbjct: 143 ILALAA 148
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -1
Query: 378 SVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 235
SVT A +P AG ++ SA STST + C+ SS T LPST+
Sbjct: 82 SVTPAAIPCAG-----SSTTASAPTSTSTRAAPACTGRSSSTGLPSTS 124
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 327 ASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 205
AS R AF + ++ S P FFS T L +L PL+ SS
Sbjct: 109 ASLRHAFLNNNSFRSIPADFFSGLTSLLVISLDQNPLNVSS 149
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 303 CRTRSAPTPACTSAARPGARPPTSRSGSRA 392
CR R P PA + RP P +R+ +RA
Sbjct: 52 CRRRRVPAPAAAAETRPTRSPSRARARARA 81
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 267 FSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 136
FS +P+ LTS +Y+H +S YGL + L + C
Sbjct: 439 FSIDDTMPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482
>07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038
Length = 198
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 330 ACTSAARPGARPPTSRSGSRACTTRSGP 413
A +S A ARPP S +G A T RSGP
Sbjct: 45 ATSSCAAALARPPPSSAGYAAKTPRSGP 72
>01_06_0918 + 32990106-32992196
Length = 696
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 404 LWPFLGICAEVVVLCA--VILFYEKRRTKPELDDSDTD 511
LW LG+C ++VL A V+ F + R EL D D D
Sbjct: 280 LWVVLGLCGLLLVLVAAGVLWFVSQWRKAGELADGDID 317
>06_03_1248 + 28685911-28687719
Length = 602
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 264 RRTSRAWTTPCWCCRTRSAPTPACTSAAR-PGARPPTSRSGSRACTTRSGP 413
++ A T + A TPA TSA R A P TS +G GP
Sbjct: 163 KKDKEAATPAATSAAAKDAATPASTSAVRKKAATPATSAAGKAVAGASPGP 213
>03_06_0145 - 31973924-31975837
Length = 637
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 312 RSAPTPACTSAARPGARPPTSRSGSRA 392
RS PTPA +A+R PP R SRA
Sbjct: 390 RSPPTPAVVAASRATNPPPPRRRTSRA 416
>03_05_0553 - 25499260-25499311,25499670-25499899
Length = 93
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 339 WYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYF 193
W+ A+A + + ++ R C SC RLP + +PL S +F
Sbjct: 12 WFALAAATAVLAGAAWLIIRACKADESCCRLPPGS-RGLPLLGESLEFF 59
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 276 RAWTTPCWCCRTRSAPTPACTSAARPGARPPTSRSGSRACTTRS 407
RA TTP C R+ +AP A TS RP PP + S A RS
Sbjct: 143 RAHTTPP-CSRSVAAPR-ASTSPLRPSPVPPPATLHSAADVQRS 184
>08_02_0405 +
16790720-16791691,16792064-16792135,16794487-16794621,
16794630-16794758
Length = 435
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 176 YSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGL-DNTVLVLQNAERADAGLYQCSPA 352
Y++++ Y+ +L +GT V G+ + + K EQG+ D T + + E D G++ P
Sbjct: 306 YAQIS-VYRLADLISGTTVPDQ-GTFI-VSKGEQGMADETEVGIDGFEE-DGGIFLLRPG 361
Query: 353 GGTPADVTLRVKGVYDALWPFLGICAEVVVLCAVIL 460
G P L + Y G+ V++LC +L
Sbjct: 362 GVWPWMELLELALAYIVRLKTSGLITYVLLLCVGVL 397
>08_01_0955 + 9478018-9478773
Length = 251
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 297 WCCRTRSAPTPACTSAARPGARPPTS 374
W C TR+AP C S R A PP+S
Sbjct: 103 WTC-TRAAPRCRCPSRCRRAAPPPSS 127
>03_06_0436 - 33910321-33910851
Length = 176
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 306 RTRSAPTPACTSAARP--GARPPTSRSGSRACTTRSGP 413
+TR+ P AC+ A RP TS SRA T S P
Sbjct: 128 KTRNTPHGACSPATRPRLATTAATSWRESRAAATSSSP 165
>02_02_0716 -
13264983-13265195,13265219-13265968,13266307-13266463,
13266542-13266582
Length = 386
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 193 EVQEGRVGQRHGRERGAGQSRAAGE 267
E Q VG HGR+RG G+ + G+
Sbjct: 269 EAQANVVGNSHGRKRGHGEKKGKGK 293
>02_01_0004 + 33108-33752
Length = 214
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 243 WAVACSWRRTSRAWTTPCWCCRTRSAPTPACTSAARPGARPPTSRSGSRACTT 401
W VA +W A T C PTP + +A G P ++GSR TT
Sbjct: 162 WKVA-AWVTGRHALTVDCIAV-VELQPTPTPSPSAIVGVLQPQDQAGSRCSTT 212
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +3
Query: 282 WTTPCWCCRTRSAPT----PACTSAARPGARPPTSRSGSRACTTRSG 410
W C R SAPT PA +A P TS S +R C + G
Sbjct: 219 WLADCRTRRAPSAPTGDPPPARAAAGPPSTGSSTSMSRARCCGSACG 265
>03_01_0020 + 180963-181346,181432-181994,183000-183822
Length = 589
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 339 SAARPGARPPTSRSGSRACTTRSG 410
S A PG RPP SG C +G
Sbjct: 136 STAAPGLRPPPCSSGGSGCAAANG 159
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 300 CCRTRSAPTPACTSAARPGARPPTSRSGSRACT 398
CC+ P+ +A G R P +R+GSR CT
Sbjct: 112 CCKIL-CPSQLPMDSAVDGPRQPPARAGSRLCT 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,954
Number of Sequences: 37544
Number of extensions: 296423
Number of successful extensions: 1529
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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