Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0223
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    31   0.16 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    31   0.21 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    30   0.37 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    29   0.86 
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    29   0.86 
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    28   1.5  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   2.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.0  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   4.6  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   4.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.6  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   8.0  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.0  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   8.0  

>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 220 HYQF-HDFHSPQLEDPDFDAKP--MILLVGQYSTGKTTFIRYLL 342
           H  F +D   P L D +F A+P  +I LVG+   GK+T +R LL
Sbjct: 588 HVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRILL 631


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +1

Query: 232 HDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFI-----RYLLERD 351
           H  H P L+ P+FD K   +  G Y   K +FI     RY +++D
Sbjct: 838 HRLHIPWLKMPNFDFKKNQVFFGNYEDSKLSFIGSNHTRYRIDKD 882


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRF 396
           F    +I+L+G+  TGKTTF +++ +     I + P+    +F
Sbjct: 372 FSDAEIIVLLGENGTGKTTFCKWMAKNSDLKISMKPQTIAPKF 414


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 271 DAKPMILLVGQYSTGKTTFIRYLLERDFP 357
           D K  + LVG    GKTT I+ +LE+  P
Sbjct: 618 DLKSRVALVGPNGAGKTTLIKLILEKVQP 646


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 427 VIPGNAL-VVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLR 546
           V+P  +L     KK F P+S  GN F  RFQ   + S  +R
Sbjct: 6   VVPFQSLRTAFQKKTFLPVSSAGNVFTPRFQLQAIRSIWIR 46


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 286 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVD 456
           +++VG+ S GKTTF+   L+ +    R  P+ T D F+       +G    N  +VD
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFR--PKKTMD-FVEHKATLSDGDQKFNLTIVD 174


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 509 RFRKALPNLLNGRNCFFGSTTNALPGITPS 420
           RFRK  P+L NG N    ST++ L  I  S
Sbjct: 3   RFRKVAPSLKNGGNLKLFSTSSTLKKIASS 32


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
 Frame = -3

Query: 653 STRSANHSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHW---NRFRKALPNL 483
           S +   HS S  K+YP   +C   +  P  +T  +     D   E +   + + K    L
Sbjct: 22  SFKEEEHSGSQTKNYPVVVKCIQ-EHDPVDTTNVLVADDLDSNFEPFSITDDYGKYENTL 80

Query: 482 LNGRNCFFGSTTNALPGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLIN 324
           ++  +       N  P  + S SS+ +    S + S  +R+  + ++   LIN
Sbjct: 81  VSHSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQSLRLNAEEIAPSSLIN 133


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 286 ILLVGQYSTGKTTFIRYLLERDF 354
           ++LVG   TGKTTF++  L  +F
Sbjct: 12  LVLVGDGGTGKTTFVKRHLTGEF 34


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 205 LPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQY 306
           LP++LH      ++P   D DFD+  M+ L+  Y
Sbjct: 53  LPIDLHKDALFANAPGKGDVDFDSVSMLQLLSDY 86


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 382  SALDQYGCPENLSLANT**MSFYRWSTVPREVSWVW 275
            S L  Y CP+  S         Y W+T PR    VW
Sbjct: 1492 STLSNYACPDCCSKEG----KLYPWNTRPRSTPSVW 1523


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 265 DFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
           DF   P I++VG  S GK++ +  ++ +DF
Sbjct: 22  DFLDLPSIVVVGSQSCGKSSVLENIVGKDF 51


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 280 PMILLVGQYSTGKTTFIRYL 339
           P+ L+VGQ  +GKTT I  L
Sbjct: 28  PLTLIVGQNGSGKTTIIECL 47


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 611 YPRSTRCFSPDRIPGVSTIEIPRS-TSDVTVE-HWNRFRKALPNLLNGRNCFFGSTTNAL 438
           YPRS  CF P     V   E+P S T   +++    R    L  L++  + F G +T  +
Sbjct: 181 YPRSMECFYPGEY--VYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRI 238

Query: 437 P 435
           P
Sbjct: 239 P 239


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 87  KKLKRHEALIHSLHHFCIRFITNPQRL 7
           K LK+H+  + SL     +F  NP++L
Sbjct: 242 KILKKHDNAVRSLEAVLAKFFKNPKKL 268


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -3

Query: 704 NSSDISSL*ASNKSMIRSTRSANHSNSPVKS-------YPRSTRCFSPDRIPGVSTIEIP 546
           +SS +SS   S+ S + S+ S+ HS+S   S          ST    P  I  VST  + 
Sbjct: 135 SSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVS 194

Query: 545 RSTSDVTVEHWN 510
              +  T  +WN
Sbjct: 195 EVVTPTTTNNWN 206


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 29/97 (29%), Positives = 42/97 (43%)
 Frame = -3

Query: 425 PSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMGLASKSGSSSCG 246
           PS SS+ ++ + S+  S        S SS  +I+        PT +   ++S S SSS  
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300

Query: 245 EWKSWNW*CSSRGNSLVL*ILLSPSTTFSIFSAFSPS 135
              S     SS  +S     L S S + S  S+FS S
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSSMSSS--SSFSSS 335


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 596 RCFSPDRIPGVSTIEIPRS---TSDVTVEHWNRFRKALPNLLNGR 471
           R  SP+ +  + T  I +    T+D     WN F K   NL NGR
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGR 48


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 151 ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQ 252
           +N  N+VEG   +Y   L  +  HY   D    Q
Sbjct: 350 KNFSNIVEGSMEVYSAYLHIIRDHYNLSDLADVQ 383


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 299 PTRSIMGLASKSGSSSCGEWKSWNW*CSSRGNSLVL*ILLSPSTT 165
           P RS+ G +S + S +    +S++   S+  NSL+  I   PS++
Sbjct: 547 PIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSS 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,028
Number of Sequences: 5004
Number of extensions: 61741
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)