Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0223
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 237 6e-63
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058... 235 2e-62
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 186 2e-47
07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756... 34 0.096
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 33 0.22
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 33 0.29
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 32 0.39
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 31 0.67
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 31 1.2
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 3.6
02_04_0162 - 20441621-20441646,20441919-20442000,20442313-204424... 29 3.6
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 4.8
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 6.3
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789... 28 8.3
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 28 8.3
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 237 bits (580), Expect = 6e-63
Identities = 106/183 (57%), Positives = 135/183 (73%)
Frame = +1
Query: 157 IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRY 336
+ +V++GLKR+Y KL PLE+ Y+F+DF SP L DFDAKPM++L+GQYSTGKTTFI++
Sbjct: 181 VTSVIDGLKRLYVEKLKPLEVAYRFNDFASPLLTSSDFDAKPMVMLLGQYSTGKTTFIKH 240
Query: 337 LLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQ 516
LL+ +PG +GPEPTTDRF+ VM E IPGN + V F L+ FG AFL++F+
Sbjct: 241 LLQTSYPGAHVGPEPTTDRFVVVMSGSDERTIPGNTIAVQADMPFTGLTTFGGAFLSKFE 300
Query: 517 CSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFADRVDRIILLFDAHKLDIS 696
CS + +L I+ VDTPG+LSGEKQR R YDFTG+ WFA + D I+LLFD HKLDIS
Sbjct: 301 CSQMPHPLLDHITFVDTPGVLSGEKQRTQRSYDFTGITSWFAAKCDLILLLFDPHKLDIS 360
Query: 697 DEF 705
DEF
Sbjct: 361 DEF 363
>06_03_1194 +
28305388-28305472,28305603-28305682,28305771-28305839,
28305936-28305993,28306082-28306134,28306229-28306271,
28306360-28306421,28306914-28307027,28307183-28307285,
28307377-28307426,28308138-28308266,28308340-28308591,
28308684-28308763,28309040-28309166,28309247-28309390,
28309849-28310034
Length = 544
Score = 235 bits (575), Expect = 2e-62
Identities = 106/183 (57%), Positives = 135/183 (73%)
Frame = +1
Query: 157 IENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRY 336
+ +V++GLK++Y KL PLE+ Y+F+DF SP L + DFDAKPM++L+GQYSTGKTTFI++
Sbjct: 156 VTSVIDGLKKLYIEKLKPLEVTYKFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKH 215
Query: 337 LLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQ 516
LL +PG IGPEPTTDRF+ VM E IPGN + V F L+ FG AFL++F+
Sbjct: 216 LLRTSYPGAHIGPEPTTDRFVVVMSGPDERTIPGNTIAVQADMPFSGLTTFGTAFLSKFE 275
Query: 517 CSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFADRVDRIILLFDAHKLDIS 696
CS + +L I+ VDTPG+LSGEKQR R YDFTG+ WFA + D I+LLFD HKLDIS
Sbjct: 276 CSQMPHPLLEHITFVDTPGVLSGEKQRTQRSYDFTGVTSWFAAKCDLILLLFDPHKLDIS 335
Query: 697 DEF 705
DEF
Sbjct: 336 DEF 338
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 186 bits (452), Expect = 2e-47
Identities = 97/201 (48%), Positives = 129/201 (64%), Gaps = 6/201 (2%)
Frame = +1
Query: 121 SWLK-KEGEKA--ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMIL 291
+W K G+K ++ ++++GLK+ Y KL PLE YQF DF SP L DFDAKPM++
Sbjct: 109 NWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEKTYQFDDFVSPLLTSSDFDAKPMVM 168
Query: 292 LVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVM-FDEKEGVIPGNALVVDPKKQ 468
L+GQYSTGKTTFI++LL+ ++PG IGPEPTTDRF+ + F + V+ +
Sbjct: 169 LLGQYSTGKTTFIKHLLKTNYPGAHIGPEPTTDRFVVITHFYQSLNVLRCLIQYIPSLAL 228
Query: 469 FRPLSKFGNAFLNRFQCSTV--TSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFA 642
L F L + ++ + +L I+ VDTPG+LSGEKQR R YDFTG+ WFA
Sbjct: 229 IILLHIFHYVALRKKLIVSIFYIAKLLDHITFVDTPGVLSGEKQRTQRSYDFTGVTSWFA 288
Query: 643 DRVDRIILLFDAHKLDISDEF 705
+ D I+LLFD HKLDISDEF
Sbjct: 289 AKCDLILLLFDPHKLDISDEF 309
>07_03_0169 + 14670994-14673714,14673799-14673879,14675460-14675612,
14675910-14676073,14676162-14676309,14676426-14676548,
14676754-14676841,14677493-14677674
Length = 1219
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ K Q RP+ K G+ L++ + +T+ S +RG P +L+G +V D F+
Sbjct: 1076 LLVNLKDQSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFS 1135
Query: 622 -GLLEW 636
G++ W
Sbjct: 1136 FGIVMW 1141
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 274 AKPMILL-VGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDE 417
++P +L+ VG++++GK+TFI LL R + ++ G PTT+ + + + +
Sbjct: 212 SEPFLLVTVGEFNSGKSTFINALLGRKY--LQEGVVPTTNEIMLLSYSD 258
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/111 (26%), Positives = 50/111 (45%)
Frame = +1
Query: 268 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNAL 447
F+ +I+++G+ TGKTTFIR L R P ++G E V + +E + ++
Sbjct: 374 FNDSQIIVMLGENGTGKTTFIRMLAGRVKPD-KVGDEEVDVPEYTVSYKPQELISKYSST 432
Query: 448 VVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRV 600
V D + P G+ +F+ + + + P + GE QRV
Sbjct: 433 VRDLLFEKVP----GSCTQAQFRSDVMKPLKIEQLMDRQVPTLSGGELQRV 479
>06_03_0927 + 26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ + RP+ K G+ L++ +C T+ S +RG P +L+G V D F+
Sbjct: 973 LLVNLRDPQRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFS 1032
Query: 622 -GLLEW 636
G++ W
Sbjct: 1033 FGIVLW 1038
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD 615
L+V+ + RP+ K G+ L+R + +T+ S +RG P +L+G RV D
Sbjct: 4034 LLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSSRVSEKVD 4090
>06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ + P+ K G+ L++ +C T+ S +RG P +L+G V D F+
Sbjct: 1131 LLVNLRDPQHPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFS 1190
Query: 622 -GLLEW 636
G++ W
Sbjct: 1191 FGIVMW 1196
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 265 DFDAKPMILLVGQYSTGKTTFIRYL 339
+F +++++G+ TGKTTFIR L
Sbjct: 369 EFTDSQIVVMLGENGTGKTTFIRML 393
>02_04_0162 -
20441621-20441646,20441919-20442000,20442313-20442411,
20443391-20443438
Length = 84
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 340 LERDFPGIRIGPEPTTDRFIAVM 408
L G + PEPTTDRF+ +M
Sbjct: 27 LSLSIAGANVEPEPTTDRFVDIM 49
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 457 PKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEW 636
PK + + S + FL + + + +T LRGI ++ I G+ + + F EW
Sbjct: 1265 PKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVGFKADNEW 1324
Query: 637 FAD 645
D
Sbjct: 1325 MLD 1327
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 509 DSSVQLSRRTYYAGSLSLTHPVSYLERNSV 598
DS+ QL Y +GSLSL H +Y +NSV
Sbjct: 1487 DSTAQLP--LYSSGSLSLNHWAAYFHQNSV 1514
>04_04_0638 -
26877640-26877825,26877954-26878160,26878866-26878925,
26879229-26879435,26879501-26879549,26880138-26880337,
26880425-26880510,26880585-26880741,26880920-26881084,
26881817-26882053
Length = 517
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 370 GPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQ 468
G + TT+ F AV+ K V G+ V+D K +
Sbjct: 138 GHQVTTENFFAVLLGNKTAVTGGSGKVIDSKPE 170
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 QFFLKGHQNTFIMFSWLKKEGEKA-ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQL 255
+ LKG F + E ++A N+ VVE +K + +++P +L HD L
Sbjct: 412 KILLKGSDVKFFQLEVIAYEEDEAINNVLQVVELVKSCFVGEMIPADLQGDLHDLKENPL 471
Query: 256 E 258
+
Sbjct: 472 K 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,361,682
Number of Sequences: 37544
Number of extensions: 381084
Number of successful extensions: 1201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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