Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0223
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   7e-41
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)              32   0.52 
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              31   0.91 
SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_31793| Best HMM Match : Acyltransferase (HMM E-Value=0.00022)       31   0.91 
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     29   2.8  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)                 29   3.7  
SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 28   6.4  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   6.4  
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)               28   6.4  
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             28   8.5  
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)                      28   8.5  
SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score =  164 bits (398), Expect = 7e-41
 Identities = 76/100 (76%), Positives = 85/100 (85%)
 Frame = +1

Query: 406 MFDEKEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSG 585
           M  + + VIPGNAL+VDP KQFR LS FGNAFLNRF CS + +DVL  I+IVDTPGILSG
Sbjct: 1   MHGDSQQVIPGNALIVDPNKQFRSLSSFGNAFLNRFCCSELPNDVLNSITIVDTPGILSG 60

Query: 586 EKQRVDRGYDFTGLLEWFADRVDRIILLFDAHKLDISDEF 705
           EKQ V RGYDFTG+L+WFA+R DRIILLFDAHKLDISDEF
Sbjct: 61  EKQSVARGYDFTGILKWFAERCDRIILLFDAHKLDISDEF 100


>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
          Length = 202

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 280 PMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGV 429
           P ++++G  + GK+TF+  LL+  +  + +   P T R + + + E   V
Sbjct: 64  PSVIVIGNQNCGKSTFLNVLLKGKY--LPVHENPCTSRIVRISYSESNFV 111


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = +1

Query: 151 ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFI 330
           E+ + ++  L++ YK  +    ++    +  + + E+     K  IL+VGQ ++GK++ I
Sbjct: 51  EDAQKIISSLQKAYKDDMNSDVINAFISEQETQKFEE-FVSKKAAILVVGQTNSGKSSLI 109

Query: 331 RYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGV-IPG-NALVVDPKKQF 471
             LL   +  +     P T R + + + +   V + G N   V  K+ F
Sbjct: 110 NELLGGTY--LPTAEIPCTSRIVRICYSDNNYVEVQGPNGECVQGKQSF 156


>SB_57870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +1

Query: 364 RIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRPLSKF-GNAFLNRFQCSTVTSDV 540
           R G    T  F  V   +K   + GNA  +     F+PL +  G       + ST     
Sbjct: 13  RTGVAIETQGFTFVTSGKKRESLTGNA-TLHLYSHFKPLQEIEGVVEYLTTEISTSKQKK 71

Query: 541 LRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFADRVDRIILLFD 675
              ++ +DTPG++ G+   +   +D    + W     D I + FD
Sbjct: 72  FPLVTFIDTPGLVDGD---MKYPFDVDEAIIWLGGLADLIFVFFD 113


>SB_31793| Best HMM Match : Acyltransferase (HMM E-Value=0.00022)
          Length = 435

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 133 KEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQYST 312
           K G  +  + +VVEGL  +    ++P+ + Y+     +     PD+   P+    GQY  
Sbjct: 255 KSGLLSVVVNSVVEGL--VPDVLIVPVNISYEKQKVRNSNTYPPDYQDLPVFRSFGQYLN 312

Query: 313 GKTTFIRYL--LERDFPGIRIGPEPTTDRF 396
               +  YL  LE  +P   +G     + F
Sbjct: 313 TTVYYRIYLQILETSYPRELLGEAKRPETF 342


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 247  PQLEDPDFDAKPMILLVGQYSTGKTTFIRYLLER 348
            P++ED  F     I++VG   +GKTT+++ LL +
Sbjct: 1442 PRMEDRRFRCPCAIMVVGPSQSGKTTWVQSLLRQ 1475


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 268  FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRI 369
            FD  P +LLVGQ  TGK+  I+ ++   +P  RI
Sbjct: 920  FDGYP-VLLVGQSGTGKSALIQNMVSPRYPYSRI 952


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 265 DFDAKPMILLVGQYSTGKTTFIRYL 339
           +F    +I+++G+  TGKTTFIR L
Sbjct: 341 EFTDSEIIVMLGENGTGKTTFIRML 365


>SB_10598| Best HMM Match : LRR_1 (HMM E-Value=4.4e-19)
          Length = 811

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQ 228
           W ++EG +A     +V GL+ I +  L+PL  HY+
Sbjct: 775 WRRREGARARR-STLVVGLRAIERGDLIPLLQHYE 808


>SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 429 YALFFVEHNGYKSICSRLWTNTDARKISL*QIPDKCRFTGGVLSHEKYHGFGIEIW 262
           Y+  +   N YK I  +LW+       +  ++  K   TGG+ S +      +E+W
Sbjct: 495 YSYTYTYTNAYKIIADQLWSAMHEVAGAAKRLTPKVSSTGGLCSFDDIANRSLELW 550


>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 270
           W +++G         +  L++ ++ KL+      ++   HSP L  PDF
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAQ-HSPDLNPPDF 97


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -3

Query: 437 PGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMGLASKSGS 258
           P ITP+ + N+  INL    SGP  +     SS   +   +P    P+  +   + +  +
Sbjct: 530 PAITPTHADNLLTINLPSAKSGP-EITSPQASSILTVTSTMPRLPVPSEMVEARSLRLAA 588

Query: 257 SSCG 246
           ++ G
Sbjct: 589 TATG 592


>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
          Length = 98

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 277 KPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDR 393
           KP++ +VG+ + GK+T +  +L R    ++  P  T DR
Sbjct: 21  KPVVAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTRDR 59


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 270
           W +++G         +  L++ ++ KL+      ++   HSP L  PDF
Sbjct: 274 WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 321


>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -2

Query: 420 FFVEHNGYKSICSRLWTNTDARKISL*QIPDKCRFTGGVLSHEKYHGFGIEIWI---FEL 250
           F +++NG + I + LW+   A   S    P  C   GG+   E +H +  +  +     +
Sbjct: 481 FLLDYNGIRMISTELWSEPGA-VFSTDACPVGC---GGICGAEYFHAYFPDFILSQELSI 536

Query: 249 RRMEIVELVVQLK 211
             +E++ +VV +K
Sbjct: 537 NALELLTIVVAVK 549


>SB_43707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 5  LSLCGFVINLIQKWCSECISASCLFS 82
          L +CG V   +Q WC  C  + CLF+
Sbjct: 19 LPICGDVFLAVQGWCGAC--SGCLFT 42


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 270
           W +++G         +  L++ ++ KL+      ++   HSP L  PDF
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 97


>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 WLKKEGEKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDF 270
           W +++G         +  L++ ++ KL+      ++   HSP L  PDF
Sbjct: 50  WFQQDGATPHTANGTIAWLRQRFEEKLISRRCDVEWAP-HSPDLNPPDF 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,678
Number of Sequences: 59808
Number of extensions: 444308
Number of successful extensions: 1349
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)