Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0223
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 485 LLNGRNCFFGSTTNALPGITPSFSSNITAINLSVV 381
           LL+GR+    STT   PG TP+  + + A+N+  V
Sbjct: 372 LLSGRSQ--KSTTGPPPGPTPAQKARMRALNIDRV 404


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 20  FVINLIQKWCSECI 61
           FV+NL   +CS+CI
Sbjct: 352 FVVNLWSGFCSQCI 365


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 598 VDRGYDFTGLLEWFADRVDRII 663
           +DR Y+ T + +WF  ++  II
Sbjct: 267 IDRLYELTKIDKWFLHKMKNII 288


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 179 SPSTTFSIFSAFSPSFLSQLNIMNV 105
           SPS+  S FS+ SP+ L   N   +
Sbjct: 92  SPSSPSSFFSSVSPTSLGSENYTGI 116


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 214 ELHYQFHDFHSPQLEDPD 267
           +LH Q H + +P + DPD
Sbjct: 446 KLHRQPHIYPNPDVFDPD 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,100
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)