Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0223
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05520.2 68417.m00839 calcium-binding EF hand family protein ... 243 8e-65
At4g05520.1 68417.m00838 calcium-binding EF hand family protein ... 243 8e-65
At3g20290.1 68416.m02571 calcium-binding EF hand family protein ... 237 7e-63
At3g46920.1 68416.m05092 protein kinase family protein similar t... 33 0.24
At1g04700.1 68414.m00467 protein kinase family protein low simil... 33 0.24
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim... 31 0.56
At3g24720.1 68416.m03104 protein kinase family protein protein k... 31 0.56
At2g35050.1 68415.m04300 protein kinase family protein contains ... 31 0.56
At1g79570.1 68414.m09276 protein kinase family protein low simil... 31 0.56
At1g16270.1 68414.m01948 protein kinase family protein contains ... 31 0.56
At3g13640.1 68416.m01718 RNase L inhibitor protein, putative sim... 31 0.74
At5g57610.1 68418.m07197 protein kinase family protein similar t... 31 0.98
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 1.3
At1g64550.1 68414.m07317 ABC transporter family protein similar ... 30 1.3
At4g30300.1 68417.m04306 ABC transporter family protein ribonucl... 29 2.3
At3g46780.1 68416.m05078 expressed protein 29 2.3
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 2.3
At1g03160.1 68414.m00293 GTP-binding protein-related contains TI... 29 2.3
At5g40360.1 68418.m04896 myb family transcription factor (MYB115... 29 4.0
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 29 4.0
At4g33050.3 68417.m04705 calmodulin-binding family protein conta... 29 4.0
At4g33050.2 68417.m04703 calmodulin-binding family protein conta... 29 4.0
At4g33050.1 68417.m04704 calmodulin-binding family protein conta... 29 4.0
At1g02740.1 68414.m00227 MRG family protein member of Pfam PF057... 29 4.0
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 28 5.2
At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr... 28 5.2
At3g53190.1 68416.m05861 pectate lyase family protein similar to... 28 6.9
At3g19720.2 68416.m02498 dynamin family protein identical to cDN... 28 6.9
At3g19720.1 68416.m02497 dynamin family protein identical to cDN... 28 6.9
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic... 28 6.9
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic... 28 6.9
At1g14420.1 68414.m01710 pectate lyase family protein similar to... 28 6.9
At3g63500.2 68416.m07153 expressed protein 27 9.2
>At4g05520.2 68417.m00839 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 243 bits (595), Expect = 8e-65
Identities = 111/196 (56%), Positives = 141/196 (71%), Gaps = 2/196 (1%)
Frame = +1
Query: 124 WLKKEG--EKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLV 297
W K + + N+ +V+GLKR+Y KL PLE+ Y+F+DF SP L DFDAKPM++L+
Sbjct: 143 WFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLL 202
Query: 298 GQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRP 477
GQYSTGKTTFI++LL D+PG IGPEPTTDRF+ M E IPGN + V F
Sbjct: 203 GQYSTGKTTFIKHLLGCDYPGAHIGPEPTTDRFVVAMSGPDERTIPGNTMAVQADMPFNG 262
Query: 478 LSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFADRVDR 657
L+ FG AFL++F+CS + VL I++VDTPG+LSGEKQR+ R YDFTG++ WFA + D
Sbjct: 263 LTSFGGAFLSKFECSQMPHPVLDQITLVDTPGVLSGEKQRMQRSYDFTGVISWFASKCDM 322
Query: 658 IILLFDAHKLDISDEF 705
I+LLFD HKLDISDEF
Sbjct: 323 ILLLFDPHKLDISDEF 338
>At4g05520.1 68417.m00838 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 546
Score = 243 bits (595), Expect = 8e-65
Identities = 111/196 (56%), Positives = 141/196 (71%), Gaps = 2/196 (1%)
Frame = +1
Query: 124 WLKKEG--EKAENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFDAKPMILLV 297
W K + + N+ +V+GLKR+Y KL PLE+ Y+F+DF SP L DFDAKPM++L+
Sbjct: 144 WFKSKSIIKPQVNVVTIVDGLKRLYTEKLKPLEVTYRFNDFASPVLTSSDFDAKPMVMLL 203
Query: 298 GQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVDPKKQFRP 477
GQYSTGKTTFI++LL D+PG IGPEPTTDRF+ M E IPGN + V F
Sbjct: 204 GQYSTGKTTFIKHLLGCDYPGAHIGPEPTTDRFVVAMSGPDERTIPGNTMAVQADMPFNG 263
Query: 478 LSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEWFADRVDR 657
L+ FG AFL++F+CS + VL I++VDTPG+LSGEKQR+ R YDFTG++ WFA + D
Sbjct: 264 LTSFGGAFLSKFECSQMPHPVLDQITLVDTPGVLSGEKQRMQRSYDFTGVISWFASKCDM 323
Query: 658 IILLFDAHKLDISDEF 705
I+LLFD HKLDISDEF
Sbjct: 324 ILLLFDPHKLDISDEF 339
>At3g20290.1 68416.m02571 calcium-binding EF hand family protein
similar to EH-domain containing protein 1 from {Mus
musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9,
receptor-mediated endocytosis 1 from [Caenorhabditis
elegans] GI:13487775, GI:13487777, GI:13487779; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 545
Score = 237 bits (579), Expect = 7e-63
Identities = 108/204 (52%), Positives = 143/204 (70%), Gaps = 3/204 (1%)
Frame = +1
Query: 103 NTFIMFSWLKKEGEKA---ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQLEDPDFD 273
+T + W + K ++ ++V+GLKR+Y KL PLE+ Y+F+DF SP L + DFD
Sbjct: 136 DTSLTAHWFSSKSSKKISLSSVTSIVDGLKRLYIQKLKPLEVAYRFNDFVSPLLTNSDFD 195
Query: 274 AKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVV 453
AKPM++L+GQYSTGKTTFI++LL+ +PG IGPEPTTDRF+ VM E IPGN + V
Sbjct: 196 AKPMVMLLGQYSTGKTTFIKHLLKSTYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAV 255
Query: 454 DPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLE 633
F L+ FG AFL++F+CS + +L ++ VDTPG+LSGEKQR R YDFTG+
Sbjct: 256 QADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFVDTPGVLSGEKQRTQRAYDFTGVTS 315
Query: 634 WFADRVDRIILLFDAHKLDISDEF 705
WFA + D I+LLFD HKLD+SDEF
Sbjct: 316 WFASKCDLILLLFDPHKLDVSDEF 339
>At3g46920.1 68416.m05092 protein kinase family protein similar to
MAP3K delta-1 protein kinase [Arabidopsis thaliana]
GI:2253010; contains Pfam profile: PF00069 Eukaryotic
protein kinase domain
Length = 1171
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ + RP+ K G+ L++ +C T+ S +RG P +L+G V D F+
Sbjct: 1023 LLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGTSSLVSEKVDVFS 1082
Query: 622 -GLLEW 636
G++ W
Sbjct: 1083 FGIVLW 1088
>At1g04700.1 68414.m00467 protein kinase family protein low similarity
to EDR1 [Arabidopsis thaliana] GI:11127925; contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 1042
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ + RP+ K G+ L+R + +T+ S +RG P +L+G RV D F+
Sbjct: 901 LLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFS 960
Query: 622 -GLLEW 636
G++ W
Sbjct: 961 FGIVMW 966
>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 605
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 250 QLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRF 396
++ + +F +I+++G+ TGKTTFIR L P GP+ F
Sbjct: 365 RVSEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDDTEGPDREIPEF 413
>At3g24720.1 68416.m03104 protein kinase family protein protein
kinase family; similar to tyrosine-protein kinase
GB:P18160 from [Dictyostelium discoideum]
Length = 297
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD 615
L+V+ + RP+ K G+ L+R + +T+ S +RG P +L+G RV D
Sbjct: 151 LLVNLRDPQRPICKVGDLGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSTRVSEKVD 207
>At2g35050.1 68415.m04300 protein kinase family protein contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ K RP+ K G+ L++ + +T+ + +RG P +LSG +V D F+
Sbjct: 1108 LLVNLKDPARPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLSGSSSKVSEKVDVFS 1167
Query: 622 -GLLEW 636
G++ W
Sbjct: 1168 FGIVLW 1173
>At1g79570.1 68414.m09276 protein kinase family protein low similarity
to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ K RP+ K G+ L++ + +T+ S +RG P +L+G +V D F+
Sbjct: 1099 LLVNLKDPSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFS 1158
Query: 622 -GLLEW 636
G++ W
Sbjct: 1159 FGIVLW 1164
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYD-FT 621
L+V+ K RP+ K G+ L++ + +T+ S +RG P +L+G +V D F+
Sbjct: 998 LLVNLKDPSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFS 1057
Query: 622 -GLLEW 636
G++ W
Sbjct: 1058 FGIVLW 1063
>At3g13640.1 68416.m01718 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 603
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 226 QFHDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFIRYL 339
Q DF +E +F +I+++G+ TGKTTFIR L
Sbjct: 358 QLGDFKLEVMEG-EFTDSQIIVMLGENGTGKTTFIRML 394
>At5g57610.1 68418.m07197 protein kinase family protein similar to
protein kinase [Glycine max] GI:170047, MAP3K delta-1
protein kinase [Arabidopsis thaliana] GI:2253010;
contains Pfam profile: PF00069 Eukaryotic protein kinase
domain
Length = 1054
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 LVVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDF-- 618
L+V+ + RP+ K G+ L++ + T+ S +RG P +LSG+ V D
Sbjct: 916 LLVNMRDPQRPICKIGDLGLSKVKQKTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYS 975
Query: 619 TGLLEW 636
G++ W
Sbjct: 976 FGIVMW 981
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 457 PKKQFRPLSKFGNAFLNRFQCSTVTSDVLRGISIVDTPGILSGEKQRVDRGYDFTGLLEW 636
PK + + S + FL + + + +T LRGI ++ I K R D F EW
Sbjct: 1267 PKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFKTSEEW 1326
Query: 637 FAD 645
D
Sbjct: 1327 MLD 1329
>At1g64550.1 68414.m07317 ABC transporter family protein similar to
ABC transporter protein GB:AAF31030 GI:6899653 from
[Leishmania major]
Length = 715
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 292 LVGQYSTGKTTFIRYLLERDFPGI 363
LVG+ TGKTTF+RY+ GI
Sbjct: 205 LVGRNGTGKTTFLRYMAMHAIEGI 228
>At4g30300.1 68417.m04306 ABC transporter family protein
ribonuclease L inhibitor - Mus musculus,PIR2:JC6555
Length = 181
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 250 QLEDPDFDAKPMILLVGQYSTGKTTFIRYL 339
+L +F +I+++G+ TGKTTFI+ L
Sbjct: 11 RLNQGEFTDSQIIVMLGENGTGKTTFIKML 40
>At3g46780.1 68416.m05078 expressed protein
Length = 510
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -3
Query: 458 GSTTNALPGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMG 279
GST N L GIT SF N+ A + + S I ++ + LI L ++ P ++
Sbjct: 217 GSTYNVLDGIT-SFFGNLFAKSQPLTISDLIEKVAQTDVAYTLIKTSLTEDFSPEKAYNV 275
Query: 278 LASKSGSSS 252
+ S GS+S
Sbjct: 276 VVSAEGSNS 284
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.5 bits (63), Expect = 2.3
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = -3
Query: 689 SSL*ASNKSMIRSTRSANHSNSPVKSYPRS----TRCFS-PDRIPGVSTIEIPRSTSDVT 525
SS ASN S+ ++ SA S SP+ P S T FS PG S+ + S +
Sbjct: 197 SSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASSAPGSSSSIFGATGSSPS 256
Query: 524 VEHWNRFRKALPNLL--NGRNCFFGSTTNALPGITPS-FSSNITAINLS 387
+ + P++ G + FFGS+++A G TPS F+S+ + S
Sbjct: 257 FSVASSASGSSPSIFGATGSSPFFGSSSSA--GSTPSLFASSSSGATTS 303
>At1g03160.1 68414.m00293 GTP-binding protein-related contains
TIGRFAM TIGR00650: GTP-binding conserved hypothetical
protein domain; contains TIGRFAM TIGR00231: small
GTP-binding protein domain; similar to mitofusin 1
precursor (GI:12744896) [Homo sapiens]
Length = 642
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/47 (27%), Positives = 30/47 (63%)
Frame = +1
Query: 283 MILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKE 423
++++VG++++GK+T I LL + + ++ G PTT+ + + + E
Sbjct: 351 LMVIVGEFNSGKSTVINALLGKRY--LKEGVVPTTNEITFLCYSDLE 395
>At5g40360.1 68418.m04896 myb family transcription factor (MYB115)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/89 (21%), Positives = 37/89 (41%)
Frame = -3
Query: 551 IPRSTSDVTVEHWNRFRKALPNLLNGRNCFFGSTTNALPGITPSFSSNITAINLSVVGSG 372
+P + ++ HWN ++ L ++ R+ F NAL S + N A+ V S
Sbjct: 239 LPGRSENIVKNHWNATKRRLHSVRTKRSDAFSPRNNALENYIRSITINNNALMNREVDSI 298
Query: 371 PIRMPGKSLSSKYLINVVLPVEYCPTRSI 285
S + +++ V+ + T S+
Sbjct: 299 TANSEIDSTRCENIVDEVMNLNLHATTSV 327
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 250 QLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
QL A P +++VG S+GK++ + L+ RDF
Sbjct: 50 QLGSQSTIALPQVVVVGSQSSGKSSVLEALVGRDF 84
>At4g33050.3 68417.m04705 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 295
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 635 HSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHWNRFRKALPNLLNGRNC 465
H NSP + RS ++ E+P+ T + +K+ PN LNGRNC
Sbjct: 32 HQNSPKSTMERSL---------SFNSWEVPKETKTDSDFEVLETKKSTPNTLNGRNC 79
>At4g33050.2 68417.m04703 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 526
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 635 HSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHWNRFRKALPNLLNGRNC 465
H NSP + RS ++ E+P+ T + +K+ PN LNGRNC
Sbjct: 32 HQNSPKSTMERSL---------SFNSWEVPKETKTDSDFEVLETKKSTPNTLNGRNC 79
>At4g33050.1 68417.m04704 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 374
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 635 HSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHWNRFRKALPNLLNGRNC 465
H NSP + RS ++ E+P+ T + +K+ PN LNGRNC
Sbjct: 32 HQNSPKSTMERSL---------SFNSWEVPKETKTDSDFEVLETKKSTPNTLNGRNC 79
>At1g02740.1 68414.m00227 MRG family protein member of Pfam PF05712:
MRG; similar to Transcription factor-like protein MRG15
(MORF-related gene 15 protein) (MSL3-1 protein) (Protein
HSPC008/HSPC061) (SP:Q9UBU8) {Homo sapiens}
Length = 316
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 121 SWLKKEGEKAENIENVVEGLKRIYKTKLLPLELHY 225
S +KK G +++E +++GL R Y K LP+ L Y
Sbjct: 202 SQMKKHGRVTDSLEEILKGL-RCYFDKALPVMLLY 235
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 698 SDIS-SL*ASNKSMIRSTRSANHSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTS 534
SD+ S+ +S K + S +NHSN+ P + SP P + E P+S S
Sbjct: 195 SDLDPSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSSNPSILISEEPKSVS 250
>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
protein / glycosyltransferase sugar-binding DXD
motif-containing protein low similarity to
alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
[gi:5726306], Gb3 synthase, Rattus norvegicus
[gi:9082162] ; contains Pfam profiles PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif
Length = 736
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -3
Query: 323 VVLPVEYCPTRSIMGLASKSGSSSCGEWKSWNW*CSSRGNSLVL*ILLSPSTTFSIFSAF 144
V L ++ TRS GL + G+ + E S NW +R N+ VL +S F
Sbjct: 209 VYLDTDFIVTRSFKGLKNSIGAQTVVEGDSKNW---TRLNNAVLIFEKDHPLVYSFIEEF 265
Query: 143 SPSF 132
+ +F
Sbjct: 266 ASTF 269
>At3g53190.1 68416.m05861 pectate lyase family protein similar to
pectate lyase 2 GP:6606534 from [Musa acuminata]
Length = 483
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 299 PTRSIMGLASKSGSSSCGEWKSWNW*CSSRGNSLV 195
PT +K + G+WK WNW S G+ LV
Sbjct: 342 PTNPFAKEVTKRVETPDGDWKGWNW--RSEGDILV 374
>At3g19720.2 68416.m02498 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 741
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 LHYQFHDFHS--PQLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
L+ +++ H+ +LE P F+A P +L+VGQ + GK+ + L+ F
Sbjct: 28 LYEAYNELHALAQELETP-FEA-PAVLVVGQQTDGKSALVEALMGFQF 73
>At3g19720.1 68416.m02497 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 777
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 217 LHYQFHDFHS--PQLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
L+ +++ H+ +LE P F+A P +L+VGQ + GK+ + L+ F
Sbjct: 28 LYEAYNELHALAQELETP-FEA-PAVLVVGQQTDGKSALVEALMGFQF 73
>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 250 QLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
QL A P + +VG S+GK++ + L+ RDF
Sbjct: 34 QLGSQSTIALPQVAVVGSQSSGKSSVLEALVGRDF 68
>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
to dynamin like protein 2b (ADL2b) [Arabidopsis
thaliana] GI:19032339
Length = 780
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 250 QLEDPDFDAKPMILLVGQYSTGKTTFIRYLLERDF 354
QL A P + +VG S+GK++ + L+ RDF
Sbjct: 34 QLGSQSTIALPQVAVVGSQSSGKSSVLEALVGRDF 68
>At1g14420.1 68414.m01710 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 459
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 248 GEWKSWNW 225
GEWKSWNW
Sbjct: 390 GEWKSWNW 397
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = -3
Query: 656 RSTRSANHSNSPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHWNRF 504
RS R ++ + + + CFS P E R D +V W RF
Sbjct: 59 RSNRDLDNHRPDARYHRSESACFSRRAFPKGFRSERERPNRDASVSSWRRF 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,678
Number of Sequences: 28952
Number of extensions: 320484
Number of successful extensions: 1112
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -