Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0221
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 99 5e-22
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 30 0.37
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 29 0.64
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.5
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 2.0
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 27 2.6
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 2.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.4
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch... 27 3.4
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 4.5
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 4.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.5
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 22 4.8
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 26 6.0
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 7.9
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 99.1 bits (236), Expect = 5e-22
Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 7/217 (3%)
Frame = +3
Query: 39 QYEQGILINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTNGIVSSGHT 218
+YE GI I+ + LD N+ K++++ + F N SN++++A++L S +T+GI GH+
Sbjct: 643 KYELGIAISGYALDKNVGKLVELINKAFWNTNLSNTDKLAIMLKTSVSGITDGIAEKGHS 702
Query: 219 YAVQAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKG-NNLR 395
+A ++ S ++ E L G+ V ++ ++ + + + + +I E +L+G + +
Sbjct: 703 FAKVSSASGLTEKTSITEQLGGLTQVKLLSQLSREESFGPLVEKLTAIRE-ILRGTSGFK 761
Query: 396 AAFHYCNTNNDVHE-YIDKFCKDLCNANDNQEVNRINWTDSKSMNKDNRGIHIAM---NI 563
AA + T ++V E + KF K + NQ+ T +KS +K+ GI+ +
Sbjct: 762 AAINASPTQHEVVEKALQKFMK---SRGVNQQ------TQTKSTSKERNGINSIKTYHEL 812
Query: 564 PVN--FCAKVIPTVAYTHPDYAKLRVLSVFLSSKYLH 668
P F AK V YTHPD A L++LS L+ KYLH
Sbjct: 813 PFQTYFAAKSCLGVPYTHPDGAPLQILSSLLTHKYLH 849
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 228 QAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNL 392
+ A S + CK +L ++ E+Q + E ++S++ S E +L G N+
Sbjct: 230 ETANSKMIYSSSCKSKILSLKKAPKKNEIQGSTPDEKLESLVHSEEELILWGYNI 284
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 29.1 bits (62), Expect = 0.64
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 471 RYTGPCRIYRCIRGHRCLYCNNGML 397
R+ C+ Y+C R H C CN +L
Sbjct: 97 RFCEKCQEYKCDRSHHCSQCNKCIL 121
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 386 IPFKYVF*YA-LYYRLYIFSFLCFLYFL 306
+P+K++F LYY LY+ ++C+ Y L
Sbjct: 68 VPYKWIFIIEMLYYELYLTLYVCWCYKL 95
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 324 QKTEDIQSVIESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRIN 503
Q + I++V++SI NNLR + N D+ E +D D N+N + E +
Sbjct: 1139 QFEDGIKNVVDSI-------NNLRTSI----ANGDIKEPLDVVTDDNTNSNFSLEETNAS 1187
Query: 504 WTDSKSMNKDNRGI 545
TD K GI
Sbjct: 1188 VTDMPESEKHENGI 1201
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 54 ILINSHCLDHNLPKMLDIWQEIFKKPNFSN 143
+L N+HC + L + D+W F K FSN
Sbjct: 3860 VLANTHCEEDCLKLLYDLWSSAF-KVEFSN 3888
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 382 GIICEQHSIIAIQTTMSTNTSINSA 456
G +CE H +A+Q +MST T S+
Sbjct: 318 GDVCEYHVDLAVQRSMSTRTEFASS 342
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 172 LFRSIAILSLLLKFGFLNISCHISSI 95
+ S+ ++ LL FGF+N+SC + I
Sbjct: 440 MLSSMITMTFLLTFGFINLSCFLLRI 465
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 571 IFAPKSYRLLRTPIRITRSYACCQCSYRRNTCTPIVREQ 687
I A R R ++ R Y C +C +CT V EQ
Sbjct: 13 IRARSCLRCRRRKVKCDRQYPCSRCKESEESCTYGVNEQ 51
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 314 YFLHDRDVLDTQQVLFAFIYRRY*RPGRLYSISVTAAYYPICQRRTVI 171
+F R VL T + F F Y R+ ++V YY IC RR +
Sbjct: 152 HFQDSRLVLYTAVMSFLFGYLRFGFLSLFIIMAVCIQYYRICDRRVKV 199
>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/64 (20%), Positives = 29/64 (45%)
Frame = +3
Query: 354 ESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRINWTDSKSMNKD 533
+ I++ ++ N++ Y N N + E + + N ND V I + D+ +++
Sbjct: 104 QPIAQVLITRNDIAERSQYVNAANTISELLHFGVVPIVNENDTLSVQEIRFGDNDTLSAI 163
Query: 534 NRGI 545
G+
Sbjct: 164 TAGM 167
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +3
Query: 165 LNNYCSSLTNGIVSSGHTYAVQAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQ 344
L+N S T + ++ Q+ + E + + QH+ M T+ +Q
Sbjct: 186 LHNALSGATTEDLDEAVKFSEQSETKCVGITIETRPDYCLDQHLDEMLRYGCTRLEIGVQ 245
Query: 345 SVIESISENVLKGNNLRAAFHYCNTNNDV-HEYIDKFCKDLCNANDNQEV 491
SV E ++ + +G+ ++A D ++ + DL N +++
Sbjct: 246 SVYEDVARDTNRGHTVKAVCETFQLAKDTGYKVVTHMMPDLPNVGMERDI 295
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 21 HVG--QSGQYEQGILINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTN 194
HVG ++ Q + IN + NLPK+ + QE+FK + + S A+ L +TN
Sbjct: 245 HVGSTRASNERQMLFINRRLV--NLPKIARVIQEVFKPYSMAQSPFFAINLR-----ITN 297
Query: 195 GIV 203
G +
Sbjct: 298 GTI 300
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.5
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Frame = +3
Query: 3 ITHITEHVGQSGQYEQGILINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCS 182
I + E + Q E +L + L+H L + +K NS +
Sbjct: 1420 IISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIESINSSLDDKSFELASA 1479
Query: 183 SLTNGIVSSGHTYAVQAARSLISSVDECKENLLGIQHVTIMQ---EVQKTQ-----KTED 338
G + H+ ++ ++ S + E KE + + TI + E+ ++ K D
Sbjct: 1480 VEKLGALQKLHSESLSLMENIKSQLQEAKEKIQ-VDESTIQELDHEITASKNNYEGKLND 1538
Query: 339 IQSVIESISENVLKGNNLRA 398
S+I +SEN+ + NNL A
Sbjct: 1539 KDSIIRDLSENIEQLNNLLA 1558
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 468 YTGPCRIYRCIRGHRCLYCNN 406
Y C +YR R C C+N
Sbjct: 183 YCHTCHLYRPPRASHCHLCDN 203
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 429 HRCLYCNNGMLLANYSL*VRFLICSLLPTVYL 334
H C++ N + NY FL+ +L +YL
Sbjct: 210 HHCIWLNTCIGRRNYRYYFIFLLSVVLSALYL 241
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 566 WYIHGYMYTAVVLVHTFRVCPINAIDF 486
W I G + T V+L TF C + +DF
Sbjct: 609 WEILGILLTPVLLFFTFPSCSQDIVDF 635
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 350 YRLYIFSFLCFLYFLHDRDVL-DTQQVLFAFIYRRY 246
+ L + + CF+ LHD ++ D + + +R+Y
Sbjct: 378 FALQRYDYYCFMQDLHDGSIINDINGIFLQYFHRQY 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,056
Number of Sequences: 5004
Number of extensions: 66130
Number of successful extensions: 216
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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