Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0221
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 35 0.071
01_01_0472 - 3473096-3474288,3474833-3474938 31 1.2
04_04_1175 + 31482471-31482548,31483780-31483821,31483901-314839... 29 2.7
03_01_0454 - 3484319-3486265 29 2.7
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 29 3.5
08_02_0126 + 12835431-12838183,12838471-12838566,12838920-128389... 29 4.7
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 6.2
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 28 6.2
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 28 6.2
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 28 6.2
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 6.2
06_01_0376 + 2709254-2711267,2711311-2711450 28 8.2
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 34.7 bits (76), Expect = 0.071
Identities = 30/108 (27%), Positives = 54/108 (50%)
Frame = +3
Query: 180 SSLTNGIVSSGHTYAVQAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIES 359
SSLTNG++SSG + AV SL+ D+ +N + + V +Q +Q E I E+
Sbjct: 254 SSLTNGVISSGPS-AVITNESLLQDHDDTTDNAVD-EAVLCLQTNGSSQANETILQEHET 311
Query: 360 ISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRIN 503
E+V+ N+++ +N+ V + +D + + EV R++
Sbjct: 312 RPESVM-SNDVQTI--DSQSNSRVDTFNSNTSEDTTKSIEVSEVQRLH 356
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/94 (22%), Positives = 43/94 (45%)
Frame = +3
Query: 81 HNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTNGIVSSGHTYAVQAARSLISSVD 260
+N+ L++ E + N + A ++N L I S Y + +RS + +D
Sbjct: 248 NNIKNSLEVLSEEHSRLLGQNKKLEAEIVN-----LKEEIASDRQQYEEKLSRS-DAEID 301
Query: 261 ECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESI 362
+C++ L + +++ + T ++Q IESI
Sbjct: 302 KCRQELADASEKLLQEKLSNSSVTAELQETIESI 335
>04_04_1175 +
31482471-31482548,31483780-31483821,31483901-31483960,
31484280-31484286,31484783-31484955,31485288-31485364,
31485854-31485992,31486008-31486163,31486217-31486263,
31486992-31487052
Length = 279
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 270 ENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLRAAFHYC 413
+ L I+ T ++++ K +K ED++ + + E VL GN+L A +C
Sbjct: 70 DKLAVIKEETNIEDLIKDEKAEDVELNM-IVDEVVLVGNDLAGALQFC 116
>03_01_0454 - 3484319-3486265
Length = 648
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 57 LINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYC 179
LI+ C +L K D+W ++ + F N ++L++++C
Sbjct: 442 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHC 482
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 156 AMLLNNYCSSLTNGIVSSGHTYAVQAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTE 335
A+L + +LT + H + ++ AR ++ EC+ IQH + V+K++ +
Sbjct: 603 ALLPDELADALTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLDQ 662
Query: 336 DIQSVIES 359
+ +I S
Sbjct: 663 LSEDLINS 670
>08_02_0126 +
12835431-12838183,12838471-12838566,12838920-12838971,
12839198-12839298,12839349-12839370
Length = 1007
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 57 LINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSS 185
+I HC H+L L ++ ++ K+ N+ + L+N C S
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/107 (17%), Positives = 47/107 (43%)
Frame = +3
Query: 75 LDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTNGIVSSGHTYAVQAARSLISS 254
+D K + + + N + + L+ CS+ + +++ G+TY + A ++
Sbjct: 52 IDQEAFKCSIVLNDFSMRANITEPSYRTVKLDGICSTFVSSVLAGGYTYTGEVA----TT 107
Query: 255 VDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLR 395
+ KEN + +I+ ++ ++ ++ESI N G ++
Sbjct: 108 DGDAKENAARVAIKSILVDIIAVTRS---NHMLESIRSNKPTGTTIQ 151
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Frame = +3
Query: 294 VTIMQEVQKTQKTE--DIQSVIESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFC---K 458
+ I + +T K E IQ +++ + ++L A+ C+ + +
Sbjct: 356 ILIKLAMDETTKREIGSIQVIVQMLMFAFTAQDDLPGAYSDCSMTMKAGQALSMLTLESA 415
Query: 459 DLCNANDNQEVNRINWTDSKSMNKDNRGIHIAMNIPVNFC 578
D C+A + +R ++ + DNR IH+A N+ N C
Sbjct: 416 DNCSAIMKEPGHRFFKDVARMLVHDNRYIHVAANVLQNLC 455
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 243 LISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLRAAFH 407
L S+ ++ K + L E QK + ED+Q +E + +L G NLR H
Sbjct: 356 LASANEKLKRSDLTTMETMTEYEKQK-RMLEDLQLRLEEAEQQILDGENLRKRLH 409
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 42 YEQGILINSHCLDHNLPKMLDIWQEIFKK 128
+ ILIN HC + N+ K L+I++ + ++
Sbjct: 662 FTYNILINGHCKEGNVKKALEIFENMSRR 690
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 393 RAAFHYCNTNNDVHEYIDKFCKDLCN----ANDNQEVNRINWTDSKSMNKDNRGIHIAMN 560
R +H C +V E K+C++L D +++R + SK DN A+
Sbjct: 218 RDDYHSCFNTYEVDEDYVKYCEELPKKIKWIGDYVDLDRSSQEWSK---MDNTTFFQALK 274
Query: 561 IPVNFCAKVIPTVAYTHPDYA-KLRVLS 641
I NFC + + + +Y LR +S
Sbjct: 275 IATNFCHMTVGLAQFAYMEYVWDLREIS 302
>06_01_0376 + 2709254-2711267,2711311-2711450
Length = 717
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 30 QSGQYEQGILINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSS 185
Q ++ LI+ HC + N+ K L + E+ +K + ++L+N S
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKS 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,571
Number of Sequences: 37544
Number of extensions: 390676
Number of successful extensions: 1063
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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