Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0221
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 91 8e-19
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2) 30 2.1
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_57619| Best HMM Match : DUF229 (HMM E-Value=0) 29 4.8
SB_12535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 28 6.3
SB_33997| Best HMM Match : Astacin (HMM E-Value=0) 28 8.4
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02) 28 8.4
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 91.1 bits (216), Expect = 8e-19
Identities = 48/138 (34%), Positives = 71/138 (51%)
Frame = +3
Query: 6 THITEHVGQSGQYEQGILINSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSS 185
THI + +YEQG++ +SHCLD NLP M +W EIF P F + ER+ L+N S
Sbjct: 520 THICTNHTDPMKYEQGVMFSSHCLDKNLPHMFYLWGEIFGSPRFKDQERLRTLINMLASD 579
Query: 186 LTNGIVSSGHTYAVQAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESIS 365
L + I SGH+YAV A S ++ E L G+ VT + + +Q
Sbjct: 580 LASSIAQSGHSYAVSLASSSLTPAARLDEVLGGLSQVTYHHCCARL-RGHAVQVTYRHCC 638
Query: 366 ENVLKGNNLRAAFHYCNT 419
L+G+ ++ +H+C T
Sbjct: 639 TR-LRGHAVQVTYHHCCT 655
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +3
Query: 375 LKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRINWTDSKSMNKDNRGIHIA 554
L+G+ ++ +H C T H + + C+A + + K ++R H
Sbjct: 769 LRGHAVQVTYHRCCTRLRGHA-VQTALEGFCDALPSSRSDTSGQVQDKEFTPESRRTHFM 827
Query: 555 MNIPVNFCAKVIPTVAYTHPDYAKL 629
+ PVN+ ++ + V Y H DYAKL
Sbjct: 828 LPYPVNYASRCVNAVTYNHEDYAKL 852
>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
Length = 442
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 363 SENVLKGN-NLRAAFHYC-NTNNDVHEYIDKFCK---DLCNANDNQEVNRINWTDSKSMN 527
+++V N +L + H C NTNN V +K D+ +NQ VN TD+K +N
Sbjct: 369 NQSVYSDNQSLDTSNHICVNTNNQVVNTNNKSVHTSHDISVDTNNQGVN----TDNKGVN 424
Query: 528 KDNRGIHIAMNIPVN 572
N+G++ NI +N
Sbjct: 425 PYNQGLYPYNNICIN 439
>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 363 SENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQ-----EVNRINWTDSKSMN 527
S N NN + + CN NN ++ + + N N+N NRIN + + + N
Sbjct: 79 SINNRNNNNNNNSINNCN-NNSINNRNNNSINNRSNTNNNSINNRSNTNRINSSSNNNDN 137
Query: 528 KDNRGIH 548
DN+ H
Sbjct: 138 SDNKSKH 144
>SB_57619| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 616
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +3
Query: 69 HCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTNGIVSSGHTYAVQAARSLI 248
H L + +D+ Q +F++ S + +A + +YC+ + VS GH + Q A +
Sbjct: 442 HILRYPDTPKVDVGQSLFQEVPKSRTCEVAGMPVHYCTCMDWKQVSPGHHHIKQLAEEAV 501
Query: 249 SSVDE 263
++E
Sbjct: 502 RHINE 506
>SB_12535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 NNDVHEYIDKFCKDLCNANDNQEVNRINWTDSKSMNKDNRGIH--IAMNIPVN 572
NND ++I+ N N+N N N ++ + N +NR I+ IA+ I N
Sbjct: 8 NNDNDKFINNSSNGNNNNNNNNNNNNNNNNNNNNNNNNNRNINAIIAITITTN 60
>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 342 QSVIESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRINWTDSKS 521
Q VI + ++N NN + N NN KFC+ + N ND ++ ++
Sbjct: 652 QQVINNNNDNSNNNNNSSSN----NNNNSSSNNNVKFCRCIKNNNDMNNIDTDTINNNSK 707
Query: 522 MNKDN 536
NK+N
Sbjct: 708 SNKNN 712
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 382 PLSTFSDMLSITDCISSVFCVFCTSCM 302
P S+F+ + C+S +FC TSCM
Sbjct: 2461 PTSSFTRVQRCCCCLSLLFCTMVTSCM 2487
>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 366 ENVLKGNN-LRAAFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRINW 506
+N L N+ L+A YC TN H +D+ C A + NW
Sbjct: 412 KNGLSPNDILQAKLMYCRTNGCTHTNLDQNCPGYAAAGYCTRTDLANW 459
>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
Length = 280
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 462 LCNANDNQEVNRINWTDSKSMNKDNRGIHIAMNIPVNFCAKVIPTVAYTHP 614
LC Q+ R+ +T++ K+N GI I MN P A +P + +P
Sbjct: 69 LCADASEQKRTRVGYTEALLETKNNAGI-ITMNRPKALNALNLPMIRKIYP 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,220,039
Number of Sequences: 59808
Number of extensions: 489635
Number of successful extensions: 1518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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