Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0221
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    32   0.34 
AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical...    29   3.2  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    28   5.6  
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    28   7.4  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    28   7.4  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    28   7.4  
AF099919-9|AAC68799.1|  229|Caenorhabditis elegans Helix loop he...    28   7.4  
Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    27   9.8  
U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    27   9.8  

>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -3

Query: 643 TDSTRSFA*SGWVYATVGMTLAQKFTGIFMAICIPRLSLFI--LLESVQLMRLTS*LSLA 470
           TD   +F    W++ TV +T +   T +++ I IPR +  +   ++   L RL   +  A
Sbjct: 190 TDYVSTFVLGAWIFITVILTFSLPITALYINISIPRSTSHVNWKIQKQLLKRLV--IQFA 247

Query: 469 LHRSLQNL--SMYSWTSLFVLQ 410
           +H  L  +   M+ +  LF  Q
Sbjct: 248 VHEILMGIPHCMFIYAVLFGYQ 269


>AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical
           protein Y111B2A.4 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 267 KENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLK 380
           +E ++ +  +    E  + QK  +IQS++ES +ENVL+
Sbjct: 155 EEEMIKLSELEKRIEALRQQKEHEIQSLVESHAENVLE 192


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 399 AFHYCNTNNDVHEYIDKFCKDLCNANDNQEVNRINWTDS-KSMNKDNRGIHIAMNIPVNF 575
           +FH+ N+   +H+Y+ +F   LC    +       W D  K +N D     I   +  NF
Sbjct: 111 SFHFMNSQTSIHKYLPRF--TLCIILKDAVFGTSFWLDELKYLNDDIFECFIISFVFFNF 168

Query: 576 CAKVIPTVAY 605
              V+    Y
Sbjct: 169 VISVLTPFIY 178


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +3

Query: 228 QAARSLISSVDECKENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLRAAFH 407
           QA R + + + EC E   G +     Q +   +  +D+Q V + +     K   +  A H
Sbjct: 67  QANRKIFNLIIECHEYYSGRKTAPYCQRIIVMETEKDMQYVYQFMMNKAQK-QGIDWATH 125

Query: 408 YCNTNNDVHEYIDKFC 455
           Y     DV+ YI+ +C
Sbjct: 126 Y-----DVNHYINFYC 136


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 414 NTNNDVHEYIDKFCKDLCNANDNQEVNRINWTDSK 518
           N   DVH +  K   DL +   N+E  R+ W D K
Sbjct: 415 NDCQDVHSHYHKLHCDLIDDEYNKEYERLIWGDKK 449


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 273 SLCIHLQKILKTWPPVQH 220
           SLC+H  + +K WPP+ +
Sbjct: 88  SLCLHTPETIKMWPPLNY 105


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 273 SLCIHLQKILKTWPPVQH 220
           SLC+H  + +K WPP+ +
Sbjct: 66  SLCLHTPETIKMWPPLNY 83


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 273 SLCIHLQKILKTWPPVQH 220
           SLC+H  + +K WPP+ +
Sbjct: 88  SLCLHTPETIKMWPPLNY 105


>AF099919-9|AAC68799.1|  229|Caenorhabditis elegans Helix loop helix
           protein 21 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = +3

Query: 420 NNDVHEYIDKFCKDLCNANDNQEVNRINWTDSKSMNKDNRGIHIAMNIPVNFCAKVIPTV 599
           +N   EYI+   K  C  NDN    R NW+D K    +  G+++ + I   F  K   + 
Sbjct: 14  HNCWEEYINGL-KWGCYRNDNLLQLRFNWSDLKEQGVE--GLNLTL-IKSQFLTKSENSD 69

Query: 600 AYTHPDYAKLRVLSVFLS 653
           A    +  KL V   FLS
Sbjct: 70  AILLVEDTKLHVNKAFLS 87


>Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical
           protein C49A1.10 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 456 KDLCNANDNQEVNRINWTDSKSMNKDNRGIHIAM 557
           K LC+       NR+NW       KDN+   +AM
Sbjct: 156 KHLCHYESIDNENRVNWQVVNDFPKDNKHGSVAM 189


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 423 NDVHEYIDKFCK--DLCNANDNQEVNRINWTDSKSMNKDN 536
           NDV EY  K C   +LCN+   Q+ + +  T+  ++N D+
Sbjct: 293 NDV-EYNVKVCNTGNLCNSQCTQDTSAVTCTECSAVNSDD 331


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -3

Query: 430 TSLFVLQ*WNAARKLFPLS----TFSDMLSITDCISSVFCVFCTSCMIVTCWIPSRFSLH 263
           T+++ LQ +  A  L P +    T   +  I    +++ CV CT C I+ C + S + LH
Sbjct: 585 TNVYYLQRYLQASDLLPTTETQQTIYQVAIILAAGAALACVICTVCAII-CSLRSSYILH 643


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 456  CRIYRCIRGHRCLYCNNG 403
            C I RC  G+ C Y NNG
Sbjct: 1389 CTISRCPAGYECTYRNNG 1406


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 346 DCISSVFCVFCTSCMIVTCWIPSRFSLHSST 254
           DC +   CV C  C  V+     ++ +HSS+
Sbjct: 31  DCATDGTCVMCLQCFEVSIHKSHKYKMHSSS 61


>U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical
           protein F57C12.2 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 459 DLCNANDNQEVNRINWTDSKSMNKDNRGIHIAMNIPVNFCAKVIPTVAYTH 611
           DL + ++++ + ++ +  ++ + K NR I +   I +NF  K +PT  Y H
Sbjct: 381 DLLSVDEDKVITQLKYVKTEVI-KCNRTI-MCCQIALNFKMKYLPTTVYDH 429


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
 Frame = +3

Query: 342 QSVIESISENVLKGNNLRAAF-----HYCNTNNDVHEYIDKFC---KDLCNANDNQEVNR 497
           ++V E++ EN  K N L+          C+T +++H Y  K C   +D  N  ++   ++
Sbjct: 115 ENVKENVKENESKLNKLKKFLSNEGKEECSTTDNIHRYTFKMCTPTQDDINKEESDTKDK 174

Query: 498 IN--WTDSKSMNKDNR 539
           I   W   K +  D R
Sbjct: 175 IEEYWQYLKQVKMDVR 190


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 344 LYIFSFLCFLYFLHDRDVLD 285
           +YI   LCF+YFL  R VL+
Sbjct: 5   IYILPLLCFVYFLFRRFVLE 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,280
Number of Sequences: 27780
Number of extensions: 377025
Number of successful extensions: 1387
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)