Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0221
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.52 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.52 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.69 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.69 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.69 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 348 VIESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCN 470
           +I S+S N +  NN +  ++Y N N + + Y  K   ++ N
Sbjct: 80  IISSLSNNTIHNNNYK--YNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 348 VIESISENVLKGNNLRAAFHYCNTNNDVHEYIDKFCKDLCN 470
           +I S+S N +  NN +  ++Y N N + + Y  K   ++ N
Sbjct: 80  IISSLSNNTIHNNNYK--YNYNNNNYNNNNYNKKLYYNIIN 118


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 267 KENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLRAAFHYCNTNND 428
           KEN L    + I+ E Q+ + T  IQ++I+ +  +VL  NN    +    +NN+
Sbjct: 336 KENELYANLMKIVHEKQQ-EITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNN 388


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 267 KENLLGIQHVTIMQEVQKTQKTEDIQSVIESISENVLKGNNLRAAFHYCNTNND 428
           KEN L    + I+ E Q+ + T  IQ++I+ +  +VL  NN    +    +NN+
Sbjct: 374 KENELYANLMKIVHEKQQ-EITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNN 426


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 3   ITHITEHVGQSGQYEQGILINSHCLDHNLPKM 98
           I+H   H         G+ IN  CLD NLPK+
Sbjct: 574 ISHFINHSCDPNLAVYGVWIN--CLDPNLPKL 603


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 60  INSHCLDHNLPKMLDIWQEIFKKPNFSNSERMAMLLNNYCSSLTNGIVSSGHTYAVQAAR 239
           ++SH L+HN  KM D  + +  K    +++   M L+    +L     SS + Y V    
Sbjct: 224 LSSHTLNHNSDKMSDQQENLTLKE--VDNKVYGMALSPVTHNLYYNSPSSENLYYVN-TE 280

Query: 240 SLISSVDE 263
           SL+ S ++
Sbjct: 281 SLMKSENQ 288


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 444 RCIRGHRCLYCNNGMLLANY 385
           +C R HR +  +NG + AN+
Sbjct: 109 KCPRRHRPVCASNGKIYANH 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,717
Number of Sequences: 438
Number of extensions: 4692
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)