Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0220
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.23 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.23 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.23 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.9  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 330 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 175
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 235 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 286


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 330 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 175
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 183 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 234


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 330 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPN 175
           N+ G + + M       SPT  TA  S T +  ++++T   F S G    PN
Sbjct: 366 NIHGMAPSVMYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPN 417


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 525 MPKAKLHRPRRMPRNEQTAWRPILG*SY 608
           MP   +H P   P   Q A + I+G  Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 49  NHHDGRVFLWCHPFIIT--SVRDMGSRG 126
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 113 WDPEAKAEYPRSNKLVI 163
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 562 QEMNKPPGDP 591
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +3

Query: 90  HHHISQRHGIQRQKQNTHAATSSSFVKH 173
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   SHVNVLLKISIN**NHHDGRVFLWCHPFIITSVRDMGSR 123
           S V+VLL+ ++    +   RV  W  P  +  + D G R
Sbjct: 68  SSVDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVR 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,437
Number of Sequences: 336
Number of extensions: 2669
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)