Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0220
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    31   0.78 
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854...    30   1.8  
10_08_0649 + 19589807-19591024                                         29   3.1  
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    29   4.1  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    29   4.1  
10_08_0645 - 19562886-19564484                                         28   7.2  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   7.2  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 345 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 208
           P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>04_02_0012 +
           8537124-8537464,8537558-8537693,8538811-8538861,
           8540190-8540413,8540491-8540715,8541520-8541619,
           8541703-8541763,8543029-8543100,8543183-8543406
          Length = 477

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -3

Query: 375 WCPIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNS 199
           W P +C G  P      + ASG+ +     +  P FN A  SF        S  +  NS
Sbjct: 141 WLPCQCDGCTP----PASAASGSQVGTEYLITRPLFNPARASFYIPSMSSTSQAVPCNS 195


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 337 CSGFGASTLNWTPSPW 384
           C+G+GA+  +W P PW
Sbjct: 31  CAGWGAAAASWRPRPW 46


>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
 Frame = +2

Query: 65  EFFYGVTLSSSHQSETWDPEAKA-EYPRSNKLVIRQA------LLGPDA-KPDELNVIQV 220
           E F      SSH    +D EA+A +  RS+  ++ +A      +L   A + D L   Q 
Sbjct: 136 ELFERANGESSHVLRIFDDEAQAMQSARSSSRMLDEAYETGVAILHKYADQRDRLKSAQR 195

Query: 221 EAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 352
           +A+ +   V L  +VLK+ E RH R+D     A +  T+V+  G
Sbjct: 196 KALDILNTVGLSNSVLKLIERRH-RVDKWIAYAGMMITVVRYKG 238


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 333  VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 181
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 615 GDGTTSPKWVSRRFVH 568
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
 Frame = +2

Query: 158 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 289
           ++  A+ GP    DE+N    ++  A+ LQ  ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,229
Number of Sequences: 37544
Number of extensions: 293855
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)