Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0220
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         41   0.001
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  28   5.6  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   7.4  
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
 Frame = +2

Query: 65  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 232
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQG 346
            + +     +  L+ G +    L++ F   PVTF L  G
Sbjct: 65  FKGDDSTHTIVSLREGATEMCALNLAF-SPPVTFKLASG 102


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 336 RVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTC 214
           RVN+T  +G +   RTC  +P       S  ++ SD + TC
Sbjct: 821 RVNITKCNGTNAQSRTCAFAPCPVNGAWSSWSAWSDCSKTC 861


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 149 NKLVIRQALLGPDAKPDELNVIQVEAMSLQ 238
           NKLV+ Q LLG  AK + + +++ E   L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 69  FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 170
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 294 RTCLDSPTFNTATGSFTASCSDMASTC 214
           R C D  T+   TGS    C D++STC
Sbjct: 284 RYCYDDMTWQPITGSPRRFCLDVSSTC 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,251
Number of Sequences: 59808
Number of extensions: 325188
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)