Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0220
(641 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC054868-1|AAH54868.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
BC041067-1|AAH41067.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
AY049737-1|AAL12172.1| 178|Homo sapiens nucleophosmin/nucleopla... 48 3e-05
AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein. 48 3e-05
AF079325-1|AAD51496.1| 178|Homo sapiens nucleophosmin/nucleopla... 44 5e-04
BC068078-1|AAH68078.1| 136|Homo sapiens NPM2 protein protein. 34 0.49
AY262114-1|AAP33135.1| 214|Homo sapiens nucleoplasmin 2 variant... 34 0.49
AY262113-1|AAP33134.1| 214|Homo sapiens nucleoplasmin 2 variant... 34 0.49
BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domai... 31 2.6
AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein pr... 31 2.6
AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein. 31 2.6
AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein. 31 2.6
AK057442-1|BAB71488.1| 556|Homo sapiens protein ( Homo sapiens ... 31 4.6
>BC054868-1|AAH54868.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 232
+ D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 358
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 89 HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>BC041067-1|AAH41067.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin, 3 protein.
Length = 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 232
+ D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 358
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 89 HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AY049737-1|AAL12172.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin 3 protein.
Length = 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 232
+ D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 358
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 89 HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AF081280-1|AAC31609.1| 178|Homo sapiens nucleoplasmin-3 protein.
Length = 178
Score = 48.0 bits (109), Expect = 3e-05
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 232
+ D FF+G LS +S T+ E + + + L + L AK DE NV++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88
Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 358
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 89 HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>AF079325-1|AAD51496.1| 178|Homo sapiens
nucleophosmin/nucleoplasmin3 protein.
Length = 178
Score = 44.0 bits (99), Expect = 5e-04
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +2
Query: 53 IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 232
+ D FF+G LS +S T+ E + + + L + L AK DE V++V A +
Sbjct: 32 VTMDSFFFGCELSGHTRSFTFKVEEEDD--ADDVLALTMLCLTEGAK-DECIVVKVVARN 88
Query: 233 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 358
+ + +PVA LK+ + LD PVTF L GSGPV
Sbjct: 89 HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPV 131
>BC068078-1|AAH68078.1| 136|Homo sapiens NPM2 protein protein.
Length = 136
Score = 33.9 bits (74), Expect = 0.49
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 95 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 271
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 272 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 358
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>AY262114-1|AAP33135.1| 214|Homo sapiens nucleoplasmin 2 variant 2
protein.
Length = 214
Score = 33.9 bits (74), Expect = 0.49
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 95 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 271
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 272 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 358
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>AY262113-1|AAP33134.1| 214|Homo sapiens nucleoplasmin 2 variant 1
protein.
Length = 214
Score = 33.9 bits (74), Expect = 0.49
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +2
Query: 95 SHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKL-PVAVLK 271
S + TW + E +S +L++ LG AK +E++ +++ + QE K+ PV +
Sbjct: 24 SQERRTWTFRPQLEGKQSCRLLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIAS 82
Query: 272 VGESRHVRLDIEFPDA--PVTFTLVQGSGPV 358
+ S + + PVTF L GSGPV
Sbjct: 83 LQASVLPMVSMVGVQLSPPVTFQLRAGSGPV 113
>BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domain
containing 14 protein.
Length = 949
Score = 31.5 bits (68), Expect = 2.6
Identities = 27/83 (32%), Positives = 39/83 (46%)
Frame = +2
Query: 47 EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 226
E++ +D VT SSS +E + YP N + L GPDA E N + +++
Sbjct: 119 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 177
Query: 227 MSLQEAVKLPVAVLKVGESRHVR 295
L+ LP VLK + HVR
Sbjct: 178 -GLRYLASLPSHVLK---NDHVR 196
>AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 31.5 bits (68), Expect = 2.6
Identities = 27/83 (32%), Positives = 39/83 (46%)
Frame = +2
Query: 47 EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 226
E++ +D VT SSS +E + YP N + L GPDA E N + +++
Sbjct: 2 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 60
Query: 227 MSLQEAVKLPVAVLKVGESRHVR 295
L+ LP VLK + HVR
Sbjct: 61 -GLRYLASLPSHVLK---NDHVR 79
>AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein.
Length = 949
Score = 31.5 bits (68), Expect = 2.6
Identities = 27/83 (32%), Positives = 39/83 (46%)
Frame = +2
Query: 47 EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 226
E++ +D VT SSS +E + YP N + L GPDA E N + +++
Sbjct: 119 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 177
Query: 227 MSLQEAVKLPVAVLKVGESRHVR 295
L+ LP VLK + HVR
Sbjct: 178 -GLRYLASLPSHVLK---NDHVR 196
>AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein.
Length = 910
Score = 31.5 bits (68), Expect = 2.6
Identities = 27/83 (32%), Positives = 39/83 (46%)
Frame = +2
Query: 47 EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 226
E++ +D VT SSS +E + YP N + L GPDA E N + +++
Sbjct: 80 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 138
Query: 227 MSLQEAVKLPVAVLKVGESRHVR 295
L+ LP VLK + HVR
Sbjct: 139 -GLRYLASLPSHVLK---NDHVR 157
>AK057442-1|BAB71488.1| 556|Homo sapiens protein ( Homo sapiens
cDNA FLJ32880 fis, clone TESTI2004122. ).
Length = 556
Score = 30.7 bits (66), Expect = 4.6
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 450 EMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 590
E +LS K+ ++ PR K R R M H P+R PR E T +P
Sbjct: 497 EQLLSEAGKVDREGTPR-KPRSHRSMGVRMEHSPQRPPRTEPTGSQP 542
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,881,470
Number of Sequences: 237096
Number of extensions: 1663014
Number of successful extensions: 3756
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3724
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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