Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0220
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical ... 31 0.70
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical pr... 29 2.8
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 29 3.7
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 29 3.7
AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transpor... 28 4.9
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 6.5
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 27 8.6
Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical pr... 27 8.6
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 27 8.6
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 27 8.6
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 27 8.6
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical
protein T05B4.13 protein.
Length = 156
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 309 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 184
N+ +RTC P+ TA+ S TAS S STC ++N SS L S
Sbjct: 87 NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 116 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 238
+ EA A R+ K + ALL PDA PD N ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730
>Z81513-5|CAB04175.1| 332|Caenorhabditis elegans Hypothetical
protein F26D2.4 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 636 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 517
RYNY D T+ + + R HF+ + L A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 286 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 384
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 286 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 384
ACT+ G I C CY C+ TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219
>AF098999-6|AAC68724.2| 787|Caenorhabditis elegans Half transporter
(pgp related)protein 4 protein.
Length = 787
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 384 PRRWCPIKCTGPEP*TRVNVTGAS-GNSMSRRTCLDSPTFNTATGSFTA 241
PR+ + +GP+P +NV G S GN+MS L S +F+ + S T+
Sbjct: 742 PRKRPAVARSGPQPAASINVAGPSQGNAMS----LLSTSFSQSASSVTS 786
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 315 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 184
S NS S + DS + ++T S T + C D STC ++ ++G +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 563 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 477
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 563 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 477
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 563 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 477
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>Z22174-2|CAA80130.2| 410|Caenorhabditis elegans Hypothetical
protein K01B6.3 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 554 SWAMQLCLWHYSTFSLFCPWVHLLHY 477
SWA+ +C+ STF+L C +LHY
Sbjct: 80 SWALLVCIIE-STFALICFLAVMLHY 104
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 563 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 477
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 563 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHY 477
WHS+ + CL + TF+ FC + +LHY
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHY 320
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 45 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 161
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 45 VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 161
V SS +T + S FHHH SQ G R +N A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,823
Number of Sequences: 27780
Number of extensions: 246986
Number of successful extensions: 753
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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