Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0220
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14850.1 68415.m01687 expressed protein                             31   0.86 
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At3g58050.1 68416.m06471 expressed protein                             28   4.6  
At4g33890.2 68417.m04809 expressed protein                             28   6.1  
At4g33890.1 68417.m04808 expressed protein                             28   6.1  
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS...    27   8.0  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    27   8.0  

>At2g14850.1 68415.m01687 expressed protein
          Length = 291

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 143 RSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKVGESRHV 292
           RS K   R + LGP  KP  L     E+MS  +A +LP+ V+ V +   V
Sbjct: 104 RSRKFRDRPSPLGPLGKPQSLTTTNDESMS--KAQRLPMEVVSVEDGEEV 151


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -3

Query: 294 RTCLDSPTFNTATGSFTASCSDMASTCIT----FNSSGLASGPNNA*RMTSLLLRGYSAF 127
           + CL  P+ N+A  S   S + +++   +     N  GL +  + +  M  +++R  S  
Sbjct: 110 KRCLSLPSSNSAKLSLVVSTTPVSAVVHSEQPKSNKDGLHASVSRSLSMNRVIVRAVSFD 169

Query: 126 ASGSHVSD*CDDERVTP 76
            + +H+S+  + +++TP
Sbjct: 170 DNKNHISNEANGDQITP 186


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 83  TLSSSHQSETWDPEAKAEYPRSN 151
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +2

Query: 143 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 292
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +2

Query: 143 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKL-------PVAVLKVGESRHV 292
           RS KL  R + LGP  KP  L     E+MS  Q A +L       PV V+ V E   V
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLSLGSRPPVEVVSVEEGEEV 178


>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
           (HSP17.6A-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]
          Length = 155

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +2

Query: 107 ETWDPEAKAEYPRSNKLVIRQALLGPDAKPD-ELNVIQVEAMSL-QEAVKLPV---AVLK 271
           + WDP  + ++P S+   I  A +  D K   E +V + +   + +E VK+ +   +VLK
Sbjct: 25  DVWDPFKELQFPSSSSSAIANARV--DWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLK 82

Query: 272 VGESRHV 292
           +   RHV
Sbjct: 83  ISGERHV 89


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -1

Query: 623 PKMATVRLAQNGSPGGLFISWHSS-----WAMQLCLWHYSTFSLFCPWVH 489
           P++ + R  + G  GG    W  S     W + + LW Y  F +   W H
Sbjct: 28  PRVYSGRTPRRGHGGGGAFQWFRSSRLVYWLLLITLWTYLGFYVQSRWAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,733
Number of Sequences: 28952
Number of extensions: 229367
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)