Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0217
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    28   1.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   3.0  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.0  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 316 TVIYKSNGKLITSPLVADARKQNAYERDNQHALSLSTVEWF 194
           T IY++NG++  S L+ +  K+    +   H LSL+T   F
Sbjct: 498 TAIYENNGRITFSSLLPNDLKRPVVAQAFSHLLSLATKSAF 538


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 495 VCSVYCG-FLHLSSLNQISLVIEKAMHERNDLFTNYF 388
           +CS+  G  +  SSL  + L++   M +RN +FTN F
Sbjct: 763 ICSLEVGPIVCYSSLKVLFLLLLSDMRDRNCIFTNIF 799


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 436 YKRNLIQG*QMKKTTIHTTYRKRSLTSSTRTIFYDFFI 549
           YKR L +      T   + Y K +L S +  + +D+FI
Sbjct: 24  YKRRLHKSTSHSSTATSSHYSKNNLPSDSPDLLFDYFI 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,055
Number of Sequences: 5004
Number of extensions: 55028
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)