Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0217
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 30   1.8  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   5.6  

>SB_6719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 552 SNKKIIKNC-SRGRS*TSFAVCSVYCGFLHLSSLNQISLVIEKAMHERNDLFTNY 391
           SNKK + +  SR +  ++F VC   C    +S +    + I K  HE ND   +Y
Sbjct: 17  SNKKALASRNSREKKSSNFTVCEKKCEKTSISDIKYWVVFIVKDCHENNDQSASY 71


>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 519

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 137 REKIQFRTSESERTDRASREPLDRGEGESVLVVSL 241
           RE+ + R  E ER    SREP DR EG+   V SL
Sbjct: 256 RERERERERERERERERSREPRDRLEGDKFSVHSL 290


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 141 KRYNLGQARVREQTERLANHSTVERERACWLS 236
           +R  LGQ  ++E T+RLA+    E + AC+ S
Sbjct: 11  ERLALGQTDIKEVTDRLASSGGSEHKAACYHS 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,761
Number of Sequences: 59808
Number of extensions: 380145
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)