Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0217
         (785 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034780-1|AAC98919.1|  353|Homo sapiens lysosphingolipid recept...    32   2.7  

>AF034780-1|AAC98919.1|  353|Homo sapiens lysosphingolipid receptor
           Edg5 protein.
          Length = 353

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 316 TVIYKSNGKLITSPLVADARKQNAYERDNQHALSLSTVEWFARRSVCSLTLACPKLYLFS 137
           + +Y   G L  S L+A               L L+ V+WFAR    S+TL+     L +
Sbjct: 66  SAMYLFLGNLAASDLLAGVAFVANTLLSGSVTLRLTPVQWFAREGSASITLSASVFSLLA 125

Query: 136 LAVTN---LSRVKFY 101
           +A+     +++VK Y
Sbjct: 126 IAIERHVAIAKVKLY 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,917,392
Number of Sequences: 237096
Number of extensions: 1773024
Number of successful extensions: 7930
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7929
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)