Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0217
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 468 HLSSLNQISLVIEKAMHERNDLFTNYFKL 382
           HLS+L + +L ++KA+   N+   N+F L
Sbjct: 866 HLSTLVEFALELKKALSSINEQSFNHFVL 894


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 435 IEKAMHERNDLFTNYFKLYLEK 370
           I+ A H+ N+L+ N  K+  EK
Sbjct: 330 IQYAQHKENELYANLMKIVHEK 351


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 435 IEKAMHERNDLFTNYFKLYLEK 370
           I+ A H+ N+L+ N  K+  EK
Sbjct: 368 IQYAQHKENELYANLMKIVHEK 389


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 412  SLMHSFLYYKRNLIQG 459
            +L+HSF+Y++  + +G
Sbjct: 1735 TLLHSFMYHEHAMTEG 1750


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 412  SLMHSFLYYKRNLIQG 459
            +L+HSF+Y++  + +G
Sbjct: 1731 TLLHSFMYHEHAMTEG 1746


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,813
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)