Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0217
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36510.1 68417.m05183 hypothetical protein                          29   4.6  
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ...    28   6.1  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    28   8.1  

>At4g36510.1 68417.m05183 hypothetical protein
          Length = 154

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 512 LLPREQFFMIFLFEGSQNISVIGGHENCGVFVTLKIYSRE*NRKSY 649
           L+ +  +FMIFLF GS+   +I      G+  T+K Y +E N K +
Sbjct: 64  LIRQSPYFMIFLFGGSRITMMI--QSIVGLLETVKYYKKE-NSKGF 106


>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
           protein similar to SP|P42731 Polyadenylate-binding
           protein 2 (Poly(A) binding protein 2) (PABP 2)
           {Arabidopsis thaliana}; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 423

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 480 CGFLHLSSLNQISLVIEKAMHERNDLFTNYFKLYLE 373
           CG+   +S N+     EKA+ +RN     Y K++LE
Sbjct: 338 CGYFEFASANEA----EKALEQRNGKSLRYHKIFLE 369


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -1

Query: 413 ETTSSPIILNYI*KNKPFFKNISLQIEY---KLICHCHLQE 300
           E   + ++L+ +  +KP F NIS QIE+   +  C+ HL +
Sbjct: 123 EALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQ 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,640
Number of Sequences: 28952
Number of extensions: 263772
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)