Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0215
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    70   2e-13
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    55   7e-09
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    52   7e-08
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    50   4e-07
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    49   5e-07
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    30   0.24 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.2  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 29/58 (50%), Positives = 36/58 (62%)
 Frame = +3

Query: 462 PEWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
           P+W     +  C+RC   FT   R+HHCRNCG VFC  CSS ++ LP  G  +PVRVC
Sbjct: 168 PDWTD---SEVCLRCRTPFTFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVC 222


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +3

Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLP 602
           W  D  +  C  C   FT FRRRHHCR CGK+FC +C ++   LP
Sbjct: 24  WQLDDESAQCNNCGGPFTWFRRRHHCRWCGKLFCYNCCNSFAKLP 68


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +3

Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASC 578
           W+ D     C  C+  FT FRR+HHCR CGK+ C  C
Sbjct: 57  WMKDERTNNCSLCETEFTLFRRKHHCRICGKIICKYC 93


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 468 WVPDIAAPACM--RCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPL 599
           W PD     C    C   F  F RRHHCR CG +FCA     +IPL
Sbjct: 151 WKPDSDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFCALHCDRNIPL 196


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +3

Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
           W  D     C  C+  FT  RRR HCR CG+V C  C    I LP++ Q  P+ +C
Sbjct: 272 WQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVL-EISLPQHPQ--PLLIC 324



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +3

Query: 468 WVPDIAAPACM--RCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPL 599
           W P++    C    CD          HCR CG +FC   S   I L
Sbjct: 131 WQPEVPDMVCHDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIKL 176


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 477  DIAAPACMRCDAHFTAFRRRHHCRNCGKV-FCASCSS 584
            D  +  C  CD+ F+    R  CR CG    C+ C S
Sbjct: 2550 DNTSELCSLCDSRFSLMEWRSQCRACGNSNVCSDCVS 2586


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 240  PRTPPPLSTHYRTNCDSV 187
            P +PPP+ T++ TN D +
Sbjct: 1736 PSSPPPIHTNFDTNADII 1753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,162
Number of Sequences: 5004
Number of extensions: 39789
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)