Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0215
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 70 1e-12
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29) 68 6e-12
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32) 68 7e-12
SB_27781| Best HMM Match : Ank (HMM E-Value=0) 63 2e-10
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 63 2e-10
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 58 5e-09
SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14) 58 5e-09
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 57 1e-08
SB_9385| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 52 5e-07
SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08) 52 5e-07
SB_22337| Best HMM Match : FYVE (HMM E-Value=1.3e-05) 47 1e-05
SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17) 44 1e-04
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 41 0.001
SB_37872| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_13532| Best HMM Match : FYVE (HMM E-Value=0.15) 37 0.012
SB_33390| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5) 29 3.2
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 28 5.5
SB_22426| Best HMM Match : Hyaluronidase_2 (HMM E-Value=1.6e-33) 28 5.5
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 28 7.3
>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
Length = 447
Score = 70.1 bits (164), Expect = 1e-12
Identities = 27/52 (51%), Positives = 30/52 (57%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKP 623
WVPD CM C FT RRRHHCR CG VFC +CSS +P+ G P
Sbjct: 378 WVPDQEVKTCMACKTRFTTVRRRHHCRKCGGVFCGACSSKRVPILSLGYSAP 429
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/58 (51%), Positives = 35/58 (60%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
P W+ D + CM CDA FT RRRHHCR CG ++C +CS N PL Y K RVC
Sbjct: 1292 PAWIRDESVTMCMLCDALFTLTRRRHHCRACGGIYCNACSHNKAPL-EYRDGKLCRVC 1348
>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
Length = 212
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 468 WVPDIAAPACMRC-DAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
WVPD A CM C FTA RRHHCR CG V C +CS+ LP KP+RVC
Sbjct: 81 WVPDSEASTCMSCMKTKFTAINRRHHCRKCGAVVCGACSTKKFLLPAQSS-KPLRVC 136
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 67.7 bits (158), Expect = 7e-12
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYG-QLKPVRVC 635
WVP+ AC CD F+A ++HHCR CG FC +CS+N P+P G ++PVRVC
Sbjct: 488 WVPNAQILACQSCDHVFSADEKKHHCRACGGGFCDNCSANKKPVPERGWGMEPVRVC 544
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/56 (44%), Positives = 29/56 (51%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
WVPD C C F R+HHCR+CG+ FC CS +P G PVRVC
Sbjct: 628 WVPDALITNCHHCKQEFKGSDRKHHCRSCGQGFCDECSKQRRTVPSRGWDHPVRVC 683
>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
Length = 255
Score = 67.7 bits (158), Expect = 7e-12
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYG-QLKPVRVC 635
WVP+ AC CD F+A ++HHCR CG FC +CS+N P+P G ++PVRVC
Sbjct: 50 WVPNAQILACQSCDHVFSADEKKHHCRACGGGFCDNCSANKKPVPERGWGMEPVRVC 106
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/56 (44%), Positives = 29/56 (51%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
WVPD C C F R+HHCR+CG+ FC CS +P G PVRVC
Sbjct: 190 WVPDALITNCHHCKQEFKGSDRKHHCRSCGQGFCDECSKQRRTVPSRGWDHPVRVC 245
>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
Length = 485
Score = 62.9 bits (146), Expect = 2e-10
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +3
Query: 492 ACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
+C C F+ R+HHCR+CG++ CA CS IP+ +Y KPVRVC
Sbjct: 428 SCHECGMKFSIKNRKHHCRHCGRLLCAKCSCKQIPIIKYELAKPVRVC 475
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +3
Query: 495 CMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
C C F F R+HHCRNCG+VFC CSS +P++G K VRVC
Sbjct: 233 CHMCRVKFGTFIRQHHCRNCGQVFCKKCSSKESIIPQFGIEKEVRVC 279
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
W+ D C C A F+ R+HHCR CG++FC SCS+N + P ++K V C
Sbjct: 938 WISDDEVNKCTSCKAEFSFLLRKHHCRMCGRIFCHSCSNNWVRTPHSRKMKRVCQC 993
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 58.4 bits (135), Expect = 5e-09
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIP 596
W+PD C C F FRRRHHCR CG++FC C + +P
Sbjct: 127 WMPDETCKECYECGEKFNTFRRRHHCRLCGQIFCYRCCNVEVP 169
>SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14)
Length = 64
Score = 58.4 bits (135), Expect = 5e-09
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIP 596
W+PD C C F FRRRHHCR CG++FC C + +P
Sbjct: 14 WMPDETCKECYECGEKFNTFRRRHHCRLCGQIFCYRCCNVEVP 56
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
W D C CD F+ R+HHCRNCG +FC+ C+S + L KP RVC
Sbjct: 352 WEEDSDVTNCNSCDKVFSITLRKHHCRNCGLIFCSDCTSKTATLA--ASKKPARVC 405
>SB_9385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 53.6 bits (123), Expect = 1e-07
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASC 578
P W+ D A C C FT RR+HHCR CG+V C C
Sbjct: 37 PRWMSDDEAHVCPLCSQKFTQIRRKHHCRQCGRVLCNKC 75
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 51.6 bits (118), Expect = 5e-07
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKV 563
P W+PD CM C FT RRHHCR CGKV
Sbjct: 1133 PVWIPDARVTMCMLCTDDFTVTNRRHHCRGCGKV 1166
>SB_20102| Best HMM Match : FYVE (HMM E-Value=3.8e-08)
Length = 910
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKV 563
P WVPD A CM C F+ RR+HHCR CGKV
Sbjct: 524 PIWVPDEVALFCMNCGLKFSLIRRKHHCRACGKV 557
>SB_22337| Best HMM Match : FYVE (HMM E-Value=1.3e-05)
Length = 47
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 525 FRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
F RRHHCR CG+V C+ CS +S + YG+ VRVC
Sbjct: 1 FNRRHHCRRCGRVVCSVCSPHSCVVHGYGKAL-VRVC 36
>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
Length = 289
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 531 RRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
R+HHCR CG+ C SCS LP G +R+C
Sbjct: 198 RQHHCRKCGRAVCQSCSEKQSTLPIMGFEYSIRIC 232
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 40.7 bits (91), Expect = 0.001
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 474 PDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSI 593
P+ C C +FT F+R+ CR C K C++C + +
Sbjct: 59 PEFTEMVCYLCSVNFTLFKRKSTCRGCKKTLCSNCFTQGL 98
>SB_37872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
W A C C + ++HC +CGK+FC C S + +P +VC
Sbjct: 278 WEHKDDARECRNCQKPLNTNKDKYHCHHCGKIFCEGCRSKT--FSNSSTRRPHQVC 331
>SB_13532| Best HMM Match : FYVE (HMM E-Value=0.15)
Length = 65
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCR 548
WVPD AA C C F R+HHCR
Sbjct: 39 WVPDHAATNCANCHTGFWIANRKHHCR 65
>SB_33390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3
Query: 485 RYVRHPLRSSLHAGVRFTSHARSGTAFFPIRQ--ITSRYGGLQIDVVHRLPSRFTGRV 318
RY+ PLR SLH+ RF ++ GT + P+R +T R G I + L + FTG V
Sbjct: 116 RYI--PLRDSLHSVTRFVTYL-YGTRYIPLRDSFVTYRNGTRYIPLRDSLHT-FTGPV 169
>SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)
Length = 320
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 477 DIAAPACMRCDAHFTAFRRRH 539
D+ P CMRC ++ A+RR H
Sbjct: 33 DVGRPLCMRCYSYARAWRREH 53
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 477 DIAAPACMRCDAHFTAFRRRH 539
D+ P CMRC + A+RR H
Sbjct: 33 DVGRPLCMRCYRYARAWRREH 53
>SB_22426| Best HMM Match : Hyaluronidase_2 (HMM E-Value=1.6e-33)
Length = 308
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 68 PEVRLPDEPVAGHDGDARTSGEXRREIAHH 157
PE++ PDE + H GDA+ + E+ HH
Sbjct: 236 PELKFPDENIFSHFGDAQV--KLTNEMYHH 263
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 545 TVMSSSKSGKVRVAPHAGGRRYVRHPLRSSLHAGVRFT-SHARSGTAFFPIRQITSRYGG 369
T +S+S SG + P G ++H S RFT SH+ S A P+ + TS
Sbjct: 1810 TPLSNSTSGDSKKQPGNGSDDNIKHIEESRRQTKHRFTGSHSSSRHAVKPLSRNTSSESS 1869
Query: 368 LQID 357
L +
Sbjct: 1870 LHYE 1873
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,367
Number of Sequences: 59808
Number of extensions: 344237
Number of successful extensions: 1143
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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