Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0215
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 80 1e-15
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 70 1e-12
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 69 3e-12
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ... 68 6e-12
At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein ... 61 5e-10
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 48 4e-06
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 46 3e-05
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 45 5e-05
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 45 5e-05
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 44 1e-04
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 43 1e-04
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 43 2e-04
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 41 6e-04
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 40 0.002
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 38 0.007
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 36 0.030
At2g41590.1 68415.m05139 expressed protein similar to zinc finge... 32 0.081
At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct... 30 1.1
At5g25200.1 68418.m02987 hypothetical protein similar to zinc fi... 29 2.0
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 29 2.0
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila... 29 2.0
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 29 2.6
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ... 29 3.4
At2g17920.1 68415.m02075 expressed protein similar to zinc finge... 28 4.5
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 28 6.0
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 79.8 bits (188), Expect = 1e-15
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLP 602
W+PD + P C CDA FT F RRHHCR CG+VFCA C++NSIP P
Sbjct: 33 WMPDQSCPVCYECDAQFTVFNRRHHCRLCGRVFCAKCAANSIPSP 77
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 69.7 bits (163), Expect = 1e-12
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIP 596
W+PD + C CD FT RRHHCR+CG+VFC C++NSIP
Sbjct: 36 WMPDQSCRVCYECDCQFTLINRRHHCRHCGRVFCGKCTANSIP 78
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/56 (51%), Positives = 31/56 (55%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQLKPVRVC 635
WVPD A C C + F AF RRHHCRNCG VFC C+ I L VRVC
Sbjct: 452 WVPDEAVSKCTSCGSDFGAFIRRHHCRNCGDVFCDKCTQGRIALTAEDNAPQVRVC 507
>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
contains Pfam domain PF01363: FYVE zinc finger
Length = 485
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFR-RRHHCRNCGKVFCASCSSNSIPLP-RYGQLKPVRVC 635
PEW+PD A CM+C FTA RHHCR CG +FC +CS +P R+ + P RVC
Sbjct: 170 PEWLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGRCLMPSRFRERNPQRVC 229
>At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein
contains Pfam domain PF01363: FYVE zinc finger
Length = 433
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 462 PEWVPDIAAPACMRCDAHFTAFR-RRHHCRNCGKVFCASCSSNSIPLP-RYGQLKPVRVC 635
P+W+PD AA ACM C F RHHCR CG +FC CS +P ++ P RVC
Sbjct: 103 PKWLPDSAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSLVPVKFRVSDPQRVC 162
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 465 EWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSS-NSIPLPRYGQL-KPVRVC 635
+WVP C C F R+RH+C NCG VFC CSS S+ + KP RVC
Sbjct: 634 KWVPGSEHSLCAGCRNPFNFRRKRHNCYNCGLVFCKVCSSRKSLRAALAPDMNKPYRVC 692
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 465 EWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSS----NSIPLPRYGQLKPVRV 632
+WV C C F R+RH+C NCG V C SCSS + P G KP RV
Sbjct: 617 KWVSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKSLKAALAPNPG--KPYRV 674
Query: 633 C 635
C
Sbjct: 675 C 675
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 465 EWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSI--PLPRYGQLKPVRVC 635
+W + C C F R+RH+C NCG VFC SCS+ KP RVC
Sbjct: 675 KWASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVC 733
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 468 WVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSI--PLPRYGQLKPVRVC 635
W + C C F+ R+RH+C NCG VFC SC+S KP RVC
Sbjct: 640 WASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVC 697
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 465 EWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSS 584
+WV C C F R+RH+C NCG V C SCSS
Sbjct: 628 KWVSGAEQSQCSTCRLAFGFTRKRHNCYNCGLVHCHSCSS 667
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 43.2 bits (97), Expect = 1e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 492 ACMRCDAHFTAFRRRHHCRNCGKVFCASCSS 584
AC C + F RR+H+C NCG +FC +CSS
Sbjct: 643 ACSSCKSAFGFTRRKHNCYNCGLLFCNACSS 673
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 465 EWVPDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQL--KPVRVC 635
+WV C C F R+RH+C NCG V C +CSS KP RVC
Sbjct: 595 KWVSGADQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVC 653
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 495 CMRCDAHFTAFRRRHHCRNCGKVFCASCSS-NSIPLPRYGQL-KPVRVC 635
C C F R+ H+C NCG VFC SC+S S+ + +P RVC
Sbjct: 642 CSGCRHPFNYMRKLHNCYNCGSVFCNSCTSKKSLAAAMAPKTNRPYRVC 690
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 495 CMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPLPRYGQL--KPVRVC 635
C C F R+RH+C NCG V C +CSS KP RVC
Sbjct: 1541 CSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVC 1589
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 474 PDIAAPACMRCDAHFTAFRRRHHCRNCGKVFCASCSSNSIPL 599
PD A C+ CD F + HHC C C +C N P+
Sbjct: 199 PDYADKKCLLCDEKFDQDQGLHHCDVCNFSICRACMKNPPPV 240
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 471 VPDIAAPACMRCDAHFTAFRRR-HHCRNCGKVFCASCSSNSIPL 599
VP A C+ C F R+ HHC C C SC N P+
Sbjct: 221 VPGYADKKCLLCREEFDGIHRQLHHCGVCNFSICRSCMKNPPPV 264
>At2g41590.1 68415.m05139 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 31.9 bits (69), Expect(2) = 0.081
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 279 SNCYRTASNRMYCPRTPPPLS 217
S+C+R NR YCP P PLS
Sbjct: 206 SSCFRFTHNRAYCPYRPRPLS 226
Score = 21.0 bits (42), Expect(2) = 0.081
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 240 PRTPPPLSTHYRTNCD 193
P+TPPP +H N D
Sbjct: 257 PQTPPPRISHPPLNHD 272
>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
identical to NADP adrenodoxin-like ferredoxin reductase
GI:28192433 from [Arabidopsis thaliana]
Length = 483
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 419 SGTA-FFPIRQITSRYGGLQIDVVHRLPSRFTGRVRRGAAHGLALDHSRTAIGLRR 255
SG A F+ ++ + G +D++ RLP+ F G VR G+A DH T I + +
Sbjct: 29 SGPAGFYTADKVLKAHEGAHVDIIDRLPTPF-GLVR----SGVAPDHPETKIAINQ 79
>At5g25200.1 68418.m02987 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 279 SNCYRTASNRMYCPRTPPPLS--THYRTNCDSV 187
S+C+R NR YCP PLS CDSV
Sbjct: 206 SSCFRFTHNRAYCPYRQRPLSIARERALFCDSV 238
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 492 ACMRCDAHFTAFRR-RHHCRNCGKVFCASCSSN 587
AC RC F R H +NCGK++ SC S+
Sbjct: 341 ACRRCGKAFAVKGDWRTHEKNCGKLWYCSCGSD 373
>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 547
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 8 VHRGGRGSAADELRGRPQEHPEVRLPDEPV 97
++ G G+AA EL P HP++ PD+PV
Sbjct: 344 INGGSSGTAAWELGREPVLHPDLYHPDKPV 373
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 543 CRNCGKVFCASCSSNSI 593
CR C K+FCASC +I
Sbjct: 507 CRTCEKLFCASCIKRNI 523
>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 907
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 586 LELHDAQNTLPQFLQ*CLLLKAVKCASH 503
LE+H + QF + C+LL+ + C SH
Sbjct: 511 LEIHVEERHHVQFAEKCMLLQCIPCGSH 538
>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 307
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 279 SNCYRTASNRMYCPRTP 229
SNC+R NR YCP P
Sbjct: 206 SNCFRFTHNRNYCPYRP 222
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 165 ELSEDQVIQNHSSFDSVYSAEEVYAXXXXXXXXXXXXXRMIQRETVSGTAADPAGETRRK 344
EL D ++ H + S Y + E R+ QR S + DP GE R+K
Sbjct: 100 ELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFHNSESVFDPVGEWRKK 159
Query: 345 S--MDNVNLQASVSTG 386
+ +DN + SV G
Sbjct: 160 TVEVDNSSSLFSVQPG 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,239
Number of Sequences: 28952
Number of extensions: 227647
Number of successful extensions: 715
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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