Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0213
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   7.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.6  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 34  YYYLKFERSDRAERSLRSLRSGDIRTELKSIELNV 138
           YY  K +R D  ER  + L    +    ++IE+N+
Sbjct: 401 YYRHKQKRRDERERYFKGLDEEKLPESGENIEINL 435


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 353 SILLRVVSSKVPFGSIVGPVVQLNINC 273
           ++ L +V+ K+P  S   P++    NC
Sbjct: 254 TVFLNLVAEKIPTTSDAVPLIGTYFNC 280


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 353 SILLRVVSSKVPFGSIVGPVVQLNINC 273
           ++ L +V+ K+P  S   P++    NC
Sbjct: 254 TVFLNLVAEKIPTTSDAVPLIGTYFNC 280


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 547 WILLVALIVYIVCYAIG 597
           W+ L+ +    +CYA G
Sbjct: 133 WVWLINISATYICYAFG 149


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 547 WILLVALIVYIVCYAIG 597
           W+ L+ +    +CYA G
Sbjct: 366 WVWLINISATYICYAFG 382


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 547 WILLVALIVYIVCYAIG 597
           W+ L+ +    +CYA G
Sbjct: 366 WVWLINISATYICYAFG 382


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 159 RVMERFIHRSHQQK 200
           ++ME+F  RSH+Q+
Sbjct: 311 KLMEKFPERSHEQQ 324


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 407 KIQVATCTHPIM 372
           KIQ ATC H I+
Sbjct: 171 KIQFATCAHLIL 182


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 IHNLYSTVPPGLLYCQMEP*KRQPVKVSNPIKNLS 373
           + N+  TV     +C+M+P +   + V   IKN +
Sbjct: 545 LKNIDLTVLESGAFCKMQPLRTLKIGVYRNIKNFN 579


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,504
Number of Sequences: 336
Number of extensions: 3755
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)