Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0213
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 48 1e-06
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 43 5e-05
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 31 0.12
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 31 0.16
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 30 0.28
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 30 0.36
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 29 0.64
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 27 1.9
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 2.6
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.9
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 26 5.9
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 23 7.2
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 7.9
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 48.0 bits (109), Expect = 1e-06
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Frame = +1
Query: 10 LCFLPESPYYYLKFERSDRAERSLRSL----RSGDIRTELKSIELNVQEDMKNRGSWSD- 174
L + PESP Y L+ ++ + L + + +I ++ I+ V+ D +
Sbjct: 257 LFWTPESPRYLLRHNHVEKVYKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHF 316
Query: 175 ------LFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEET 336
LFT +N+++++I + QQF G+ A+ +S IF + G
Sbjct: 317 FHSLKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQ-SVG------------ 363
Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY- 513
+ SI SI++G I++ + +DR+GR+ ++F
Sbjct: 364 FKNSISV---SIVVGATNFVFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAYHFLP 420
Query: 514 -DTNKQAVQNVSWILLVALIVYIVCYAIGLSTVPY 615
DT + +++L ++I+++ YA G+ +P+
Sbjct: 421 ADTTQNTNSGWQYVVLASIIIFLASYASGIGNIPW 455
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 42.7 bits (96), Expect = 5e-05
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
Frame = +1
Query: 7 VLCFLPESPYYYLKFERSDRAERSLRSL----RSGDIRTELKSIELNVQED------MKN 156
+L +LPESP +K ERS A +L + +I+T+L I+ V++ K
Sbjct: 263 ILIWLPESPRLLVKKERSQEAYNTLARIYPTAHPYEIKTKLYLIQEGVRDPFSGSRWQKI 322
Query: 157 RGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEET 336
++ +L+ +N +A+ + G+ +QQ G +++ +S IF G
Sbjct: 323 VKTFKELYFNPSNFRALILACGLQAMQQLSGFNSLMYFSSTIFE-VVGFN---------- 371
Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY- 513
P +II I++ ++D GR+ F+F
Sbjct: 372 -----NPTATGLIIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFLP 426
Query: 514 ---DTNKQAVQNVSW--ILLVALIVYIVCYAIGLSTVPY 615
+ N + Q+ +W ++L+++IVY+ YA GL +P+
Sbjct: 427 KDENGNYTSGQSNAWAIVVLISMIVYVASYASGLGNLPW 465
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +1
Query: 10 LCFLPESPYYYLKFERSDRA-----ERSLRSLRSGDIRTELKSIELNVQEDMK-NRGSWS 171
+ FLPESP Y + + + A + ++ I+TE I+ + + +M +W
Sbjct: 196 ISFLPESPRYLIAIGKDEEALDIMCKNNVLPREHEIIQTEYHVIKTDCEAEMAGGPATWG 255
Query: 172 DLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCT 294
D+ A + ++ LGV ++QQ G Y +F T
Sbjct: 256 DIL-GADIRYRTFLGLGVMSLQQLTGDNYYFYYGFEVFEGT 295
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 334 TTRKSIEPYQESIIIGCVQVAT---CILSVLLVDRVGRK 441
T S ++ +I G V V + CILS L+DR+G++
Sbjct: 48 TDTYSYSSARQGLITGMVNVGSMTGCILSSPLMDRIGKR 86
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +1
Query: 10 LCFLPESPYYYLKFERSDRAERSLRS-----LRSGDIRTELKSIELNVQEDMK-NRGSWS 171
+ FLPESP Y + R + A + + + I+TE I+ + + ++ +W
Sbjct: 196 ISFLPESPRYLISVGRDEEALQIMAKNNDLPIEHEVIQTEYHVIKSDCEAELAGGPATWP 255
Query: 172 DLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCT 294
++F + ++ LGV ++QQ G Y +F T
Sbjct: 256 EIFGPDIRYRT-FLGLGVMSLQQLTGDNYYFYYGFEVFEGT 295
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 10 LCFLPESPYYYLKFERSDRAERSLRSLR-----SGDIRTELKSIELNVQEDMKNRG-SWS 171
+ FLPESP Y ++ + + A R L S +++ E ++ ++ E+ SW+
Sbjct: 200 ILFLPESPRYLIQVGKDEEAVRVLSESAELFPDSEEVQNEYHRLKSSIDEEFAGGPCSWA 259
Query: 172 DLFTEATNKKAMWITLGVFTVQQFCGS 252
+F + + ++ + V ++QQ G+
Sbjct: 260 SIFGKDIRYRT-FLGMFVMSLQQLTGN 285
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.9 bits (64), Expect = 0.36
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Frame = +1
Query: 10 LCFLPESPYYYLKFERSDRAERSL-----RSLRSGDIRTELKSIELNVQEDMK-NRGSWS 171
+ FLPESP Y + + D A + + L I+TE +I+ + ++ W
Sbjct: 166 IIFLPESPRYLIAIGKDDEALKIMCYNNDLPLEHEIIQTEYHTIKSDCDAELAGGPARWP 225
Query: 172 DLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCT 294
++F A + ++ + V QQ G+ Y +F T
Sbjct: 226 EIF-NANIRYRTFLGMAVMMFQQLTGANYYFYYGTQVFRGT 265
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 29.1 bits (62), Expect = 0.64
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Frame = +1
Query: 16 FLPESPYYYLKFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWSDLFTEATN 195
FLPESP Y + R + A R + ++ ++ E + I+ N +K SD+ E
Sbjct: 198 FLPESPRYLIYKGRDEEALRIMCNM--AELSPESEIIQTNF-NTIK-----SDIEIEMAG 249
Query: 196 KKAMWITL-GVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSIEPYQESI 372
KA WI + G + C V+ + + I N + T I + ++
Sbjct: 250 GKARWIEIFGKDIRYRTCLGFLVMLFRELIGN--NYYFYYATQVFKGTGMTDI--FLPAV 305
Query: 373 IIGCVQVATCILSVLLVDRVGRK 441
I+G + T ++ +D +GR+
Sbjct: 306 ILGAINFGTTFGALYTIDNLGRR 328
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +1
Query: 142 EDMKNRGSWSDLFTEATNKKAM-WITLGVFTVQQFCGSAAVVAYSQFIFN---CTTGPTI 309
E++K G +D+ EA + + + L + + V ++++ CTT +
Sbjct: 1000 ENVKKEGELTDVQIEAAIYELLDYFDLNFSIIAKHLTKDVFVTVMSYVWDEVVCTTEELL 1059
Query: 310 LPNGTLEETTRKSIEPYQESIIIGCVQ 390
LP +++ RK + P Q +I+ +Q
Sbjct: 1060 LPPVSVKPINRKPLSPAQMAIVYRWLQ 1086
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 1.9
Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Frame = +1
Query: 16 FLPESPYYYLKFERSDRAERSLRSLRSGD-----IRTELKSIELNVQEDMKN-RGSWSDL 177
FLPESP Y + R + A R + D I+T +I+ +++ +M + W ++
Sbjct: 198 FLPESPRYLIYKGRDEEALRIMCQTAELDPESEIIQTNFNTIKSDIEMEMAGGKARWPEV 257
Query: 178 FTEATNKKAMWITLGVFTV--QQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSI 351
F + + + LG T+ ++ G+ Y+ +F TG T +
Sbjct: 258 FGKEVRYRTV---LGFLTMLLRELIGNNYYFYYATQVFK-GTGMTDI------------- 300
Query: 352 EPYQESIIIGCVQVATCILSVLLVDRVGRK 441
+ ++I+G + T ++ +D +GR+
Sbjct: 301 --FLPAVILGAINFGTTFGALYTIDNLGRR 328
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 351 RTLSRIYHNRMRAGCYLYLVRTPRGPSRTQTASLAID 461
R L + HN A C L+ + P P+ T TA A++
Sbjct: 188 RELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALE 224
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 55 RSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWSDLFT 183
R+D ++ + S S + ++E +S ELNV ED N+ S L T
Sbjct: 501 RNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALGT 543
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 25 ESPYYYLKFER---SDRAERSLRSLRSGDIRTELKSIELNVQ-EDMKN-RGSWSDLFTEA 189
+ P +LK + D ++ + + +R EL I L + D ++ WSD+F +
Sbjct: 399 DKPQEFLKHQIHKVEDYLRKNHKGSKDARMRIELSKIYLYSEISDFESVEKCWSDMFHDF 458
Query: 190 TNKKAMWITLGVFTVQ 237
N+ WI+ + T++
Sbjct: 459 QNQALYWISRYISTMK 474
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 5.9
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = -2
Query: 476 SPTPKVDSKRSGLRPTRSTRSTDKIQVATCTHPIMIDS**GSILLRVVSSKVPFGSIVGP 297
SPT VD R S D A C P I+ L V+ +P G++
Sbjct: 153 SPTRFVDDPEEAYVMQRYRESHDFYH-AICNMPTNIEGELAIKWLEFVNMGLPVGALSAL 211
Query: 296 VVQLNINCEYAT 261
L +NCE A+
Sbjct: 212 FGPLRLNCEQAS 223
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 23.0 bits (47), Expect(2) = 7.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 494 PIVPFISPTPKVDSKRSGLRPTRSTRSTDKI 402
P PF+S TP + ++ S + + R D +
Sbjct: 744 PTSPFLSGTPSIANQSSSIASLQFGRMVDSL 774
Score = 20.6 bits (41), Expect(2) = 7.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -2
Query: 311 SIVGPVVQLNINCEYATTAALPQNCCTVKTPRVIHIAF 198
S+VGPV + + +L Q + ++PR + F
Sbjct: 773 SLVGPVQPIPAQTTGCSVHSLQQRTFSNESPRAVDSGF 810
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +1
Query: 502 FYFYDTNKQAVQNVSWILLVALIVYIVCYAIGLSTV 609
FY ++ N +W++L+ +Y IG++T+
Sbjct: 1195 FYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATI 1230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,089
Number of Sequences: 5004
Number of extensions: 60930
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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