Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0213
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0) 44 9e-05
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 38 0.006
SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_35660| Best HMM Match : dTDP_sugar_isom (HMM E-Value=0) 30 1.5
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 30 1.5
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12) 30 2.0
SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08) 29 3.6
SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 512
Score = 44.4 bits (100), Expect = 9e-05
Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Frame = +1
Query: 4 LVLCFLPESPYYYLKFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWSDLFT 183
+++ F+PE+P + L +R A ++ R + E + + D S ++ F
Sbjct: 215 VLMFFVPETPRWSLSHKRRRDALDAMMWFRGPEADVEEECYRIEATMDNTQSMSCAE-FC 273
Query: 184 EATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSIEPYQ 363
K ++I++ + QQFCG A++ S IF+ +++ K++
Sbjct: 274 RPAIMKPLFISIALMFFQQFCGINAILFNSASIFH---------QAGFQDS--KAV---- 318
Query: 364 ESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFY--DTNKQAVQ 537
S+IIG VQ ++ L+VD+ GRK +G YF Y T +Q
Sbjct: 319 -SVIIGAVQFVGTGIACLVVDKAGRKLLLWTTALGMTVSLIALGFYFELYIPTTQEQPTP 377
Query: 538 ---------------NVSWILLVALIVYIVCYAIGLSTVPYVTIGGDVP 639
+SW+ + +++V+ + +A+ VP++ + P
Sbjct: 378 TPALLESIHHSIPAGKISWLAITSIVVFNLVFALAWGPVPWLVMSEIFP 426
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +1
Query: 352 EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA 531
+P I+IG VQ +S+ L+DR GR+ T YF+
Sbjct: 375 DPTGVPILIGAVQFVASAISLALIDRGGRRFLLIVAGVGMSISCFTCAVYFFITVNFGMT 434
Query: 532 VQNVSWILLVALIVYIVCYAI 594
+++W+ + ++ VYIV +A+
Sbjct: 435 EVDIAWLSVTSVAVYIVGFAL 455
>SB_57705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 148 MKNRGSWSDLFTEATNKKAMWITLGV--FTVQQFCGSAAVVAYSQFIFNCTTGPTILPNG 321
+K S S + + K +W T + ++F GS V + F+CT GP ++ G
Sbjct: 474 LKPTSSSSQVIDDKCPCKEIWETRNTSKYRRKKFSGSGKV----ESTFSCTCGPNVVQRG 529
Query: 322 TLEETTRK 345
TL + RK
Sbjct: 530 TLLQKKRK 537
>SB_35660| Best HMM Match : dTDP_sugar_isom (HMM E-Value=0)
Length = 229
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +1
Query: 103 IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFI 282
I E+ + ++++ED G W + A NK+ +W+ G G ++F+
Sbjct: 144 ISGEVFDVAVDIREDSPTFGKWVGEYLSAENKRQLWVPEGFAH-----GFYVTSEDAEFV 198
Query: 283 FNCT 294
+ CT
Sbjct: 199 YKCT 202
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 19 LPESPYYYLKFERSDRAERSLRSLRSG-DIRTELKSIELNVQEDMKNRGSWS--DLFTEA 189
LPESP + + + A +L +R D+ EL+++ + + K R +
Sbjct: 228 LPESPRWLISKCKYAEARAALCKIRGRTDVDRELEAVRRTCKVERKERSGQVLIRILRFP 287
Query: 190 TNKKAMWITLGVFTVQQFCGSAAVVAYSQFI 282
++A+ + + +QQ CG V+ YS I
Sbjct: 288 NTRRALLVGCMLQAIQQLCGINTVMYYSATI 318
>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
Length = 660
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 320 PFGSIVGPVVQLNINCEYATTAALPQNCCTVKTPRVIHIAFLLVASVNK 174
PF + PVV N+ E+ +PQ C +T + H+ F V K
Sbjct: 9 PFPCLFPPVVPKNVLAEWLDVQKVPQYHC-AETEKYAHVTFFFNGGVEK 56
>SB_46144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 299 PVVQLNINCEYATTAALPQNCCTVKTPRVI 210
P + + +YAT +LPQ+ C VK P+ I
Sbjct: 16 PGSNIYVKRQYATRLSLPQDVCAVKMPKNI 45
>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
Length = 857
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 301 PTILPNGTLEETTRKSIEPYQES 369
P LP G L E + K I P+QES
Sbjct: 435 PVALPRGPLREISNKPIPPFQES 457
>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 142 EDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPT 306
ED + RGSW D + + A W+ + F + VV Y+ + C G T
Sbjct: 152 EDSQPRGSWWDGIRDVVSLWAQWLLMFAFLI-----IYVVVTYATELHGCPRGYT 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,765,845
Number of Sequences: 59808
Number of extensions: 511599
Number of successful extensions: 1285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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