Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0213
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 37 0.012
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical pr... 34 0.084
AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical ... 32 0.34
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 32 0.45
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF022974-3|AAC48037.1| 346|Caenorhabditis elegans Seven tm rece... 31 0.78
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 29 2.4
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 29 3.2
Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical p... 29 3.2
AF039042-11|AAC48251.1| 343|Caenorhabditis elegans Serpentine r... 29 3.2
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical pr... 29 4.2
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 29 4.2
U39645-7|AAA80364.1| 190|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 28 7.3
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 37.1 bits (82), Expect = 0.012
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 4/209 (1%)
Frame = +1
Query: 1 GLVLCFLPESPYYYLKFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGS---WS 171
G L F PESP + ++ ++ A +S+ + +I K + ++E+ KN
Sbjct: 199 GAALPFFPESPGFLIQRGATEAATKSIAYYYNCEIDEAEKHLN-EIKEEQKNSTKNFKMM 257
Query: 172 DLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSI 351
D+ + + + +I + V F G A + A++ I L++T K +
Sbjct: 258 DIVRKKSLRDKAFIGVVVTFAMSFSGVAVINAFAFDI--------------LKDTGLKVL 303
Query: 352 EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTI-GTYFYFYDTNKQ 528
E + I V + + I++ ++VDR GR+P N I F FY
Sbjct: 304 EASLANDAISVVSMISSIVAAVIVDRNGRRPLLLISFAGILVCNLIIFALMFTFYKFENH 363
Query: 529 AVQNVSWILLVALIVYIVCYAIGLSTVPY 615
+ +IL+ + ++ +A+G + Y
Sbjct: 364 V---LGFILICFICIFTFFFALGPGPLCY 389
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 35.5 bits (78), Expect = 0.036
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 2/207 (0%)
Frame = +1
Query: 1 GLVLCFLPESPYYYLKFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWS--D 174
G L F PESP Y ++ + A S+ + K ++ +E M + ++ D
Sbjct: 199 GAALPFFPESPGYLIQKGSLESATISISFYYKCEKEEADKHVKEIQKEQMNSTKKFTMLD 258
Query: 175 LFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSIE 354
+ + + + ++ V V F G A + A++ F TG +L + T
Sbjct: 259 VIQQKSLRDKAFVGAVVTFVMSFSGVAVISAFA-FEILVNTGLNVLQASLANDATT---- 313
Query: 355 PYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAV 534
V V + +L++ ++D+ GR+P N I + +D K
Sbjct: 314 ---------IVSVISSVLAIAIIDKNGRRPLLLISLAGILICNLIIFGLMFTFD--KFGN 362
Query: 535 QNVSWILLVALIVYIVCYAIGLSTVPY 615
Q + +IL+ + ++ +A+G + Y
Sbjct: 363 QVLGFILIFFICIFQFFFALGPGPLSY 389
>Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.6 protein.
Length = 479
Score = 34.3 bits (75), Expect = 0.084
Identities = 16/82 (19%), Positives = 41/82 (50%)
Frame = +1
Query: 391 VATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQAVQNVSWILLVALI 570
+ + +L+ + +D++GR+P +N + + + YD+ K + ++W L +
Sbjct: 327 IVSALLAAIAMDKIGRRPLLITSLLVLALINIFMMSLVFLYDSTKDSF--LAWPFLALFV 384
Query: 571 VYIVCYAIGLSTVPYVTIGGDV 636
++ ++IG+ V IG ++
Sbjct: 385 LFTFVFSIGIGPAA-VFIGAEL 405
>AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical
protein C05D2.8 protein.
Length = 426
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 46 KFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLG 222
K + D E + S GD E +E+ + DMK S +F +A+N+ +ITLG
Sbjct: 60 KSHKEDNKENLMNSQWGGD-GGERDIVEMEKKHDMKQDWSADAVFFDASNRDGWYITLG 117
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 31 PYYYLKFERSDRAERSLRSLRSGDIRTELKSIELNVQEDMKNRGSWSDLFTEA 189
P Y+KFER + ER +R IR+ +KS L + K R W+D T+A
Sbjct: 624 PLEYMKFERMEEDER----IRCLQIRSRVKS-ALIIFSSEKERNQWTDDLTKA 671
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.59
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 1/154 (0%)
Frame = +1
Query: 160 GSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIF-NCTTGPTILPNGTLEET 336
G++ +LFT + + +++ V QQF G AV A+S +F N P I TL
Sbjct: 309 GTFRELFTRPDLRIPLAVSIIVMIAQQFTGCTAVFAFSTDMFLNAGLTPVIARFSTL--- 365
Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYD 516
IG V S L+ +VGR+ M + + +
Sbjct: 366 ------------AIGIVYFLFACTSPFLIHKVGRR--WLSLFQLASCMVALMLLSLFTFL 411
Query: 517 TNKQAVQNVSWILLVALIVYIVCYAIGLSTVPYV 618
N + ++ + + +L+ Y+ Y +G S +P++
Sbjct: 412 QNYENIEWARYGTIFSLVFYMCVYGVG-SPIPWI 444
>Z81122-5|CAB03357.1| 579|Caenorhabditis elegans Hypothetical
protein T13F2.6 protein.
Length = 579
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 186 SHQQKSDVDYSRGFHGTTVLW*RCSCSVFTIYIQLYHRAYYTAKWNLRRDNP 341
SH + VD S FH + S ++ I + +HR+ AKW L R NP
Sbjct: 370 SHDVEFVVDISGMFHDQNL-----SLGLYEIKVVRFHRSNVFAKWRLARKNP 416
>AF022974-3|AAC48037.1| 346|Caenorhabditis elegans Seven tm
receptor protein 207 protein.
Length = 346
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 505 YFYDTNKQAVQNVSWILLVALIVYIVCYAIGLSTVPY 615
YFY+TN + ++ + +A+IV I+ + L TV Y
Sbjct: 184 YFYETNSDGITDIYYPSFIAIIVNILITIVSLITVFY 220
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 29.5 bits (63), Expect = 2.4
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 5/196 (2%)
Frame = +1
Query: 4 LVLCFL-PESPYYYLKFERSDRAERSLRSL-RSGDIRTELKSIELNVQEDMKNRGSWSDL 177
L+ FL PESP Y ++ + A +S++ + + +R +L E+ ED+ + D
Sbjct: 241 LICAFLLPESPKYLIQARKGKLAVKSIKYINKFKRVRNQLTDTEI---EDVVHSAIEVDT 297
Query: 178 FTEATNKKAMWITLGV---FTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKS 348
+ A KK +I L + TVQ S ++ + S + +L
Sbjct: 298 KSRAKAKKYSFIHLYIHPKITVQTVVASISMFSVSYVTYGLLFNYDVLTGSIYMNAAVSG 357
Query: 349 IEPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQ 528
Y ++G V +L + VGRK M G +F ++ N
Sbjct: 358 FLRY----VVGAV---VAVLDHFGGEHVGRK--RMHFITVSFIMCCMFGIFFIYF--NDL 406
Query: 529 AVQNVSWILLVALIVY 576
++ SWI + L+ +
Sbjct: 407 VLEYKSWIRALTLLAF 422
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 103 IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFT-VQQFCGSAAVVAYSQF 279
+ ELK ++ V D+ +RG W F +A W T GV T + +F G+ +V F
Sbjct: 478 LNNELKKVDSTVPIDISHRGRWEG-FKQAPKAIESWDT-GVATDLLRFIGAGSVKVPEDF 535
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 103 IRTELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFT-VQQFCGSAAVVAYSQF 279
+ ELK ++ V D+ +RG W F +A W T GV T + +F G+ +V F
Sbjct: 478 LNNELKKVDSTVPIDISHRGRWEG-FKQAPKAIESWDT-GVATDLLRFIGAGSVKVPEDF 535
>Z66522-7|CAA91409.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 29.1 bits (62), Expect = 3.2
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Frame = +1
Query: 4 LVLCFLPESPYYYLKFERSDRAERSLRSLR--SGDIRTELKSIELNVQEDMKNRGSWSDL 177
L+L LPE+P + L + D E +++S++ GD T+ K V ED++
Sbjct: 198 LILFILPETPKFLLISK--DEEEEAIKSVKYYHGD-GTDAKQ----VLEDIRKEAECEQD 250
Query: 178 FTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGT--LEETTRKSI 351
+++T + M +FT ++ A +++ S + N +L + T LE +S
Sbjct: 251 SSKSTTFQKM---KELFT-ERHLRMALILSVSA-LTNTVGLWALLLSSTFFLENANVESE 305
Query: 352 EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA 531
+ +G V+ I +++++VGR+ +N F F+ +
Sbjct: 306 IAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTF----LNNLALIAFVFFAKIRIL 361
Query: 532 VQNVSWILLVALIVYIVCYAIGLSTVPYVTIGGDVP 639
+ + + LVALI+Y Y G+ + + VP
Sbjct: 362 IDPMKYGCLVALIIYGYTYGTGVGPISWFISSELVP 397
>Z66520-13|CAA91392.2| 472|Caenorhabditis elegans Hypothetical
protein F14E5.1 protein.
Length = 472
Score = 29.1 bits (62), Expect = 3.2
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Frame = +1
Query: 4 LVLCFLPESPYYYLKFERSDRAERSLRSLR--SGDIRTELKSIELNVQEDMKNRGSWSDL 177
L+L LPE+P + L + D E +++S++ GD T+ K V ED++
Sbjct: 198 LILFILPETPKFLLISK--DEEEEAIKSVKYYHGD-GTDAKQ----VLEDIRKEAECEQD 250
Query: 178 FTEATNKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNCTTGPTILPNGT--LEETTRKSI 351
+++T + M +FT ++ A +++ S + N +L + T LE +S
Sbjct: 251 SSKSTTFQKM---KELFT-ERHLRMALILSVSA-LTNTVGLWALLLSSTFFLENANVESE 305
Query: 352 EPYQESIIIGCVQVATCILSVLLVDRVGRKPXXXXXXXXXXXMNGTIGTYFYFYDTNKQA 531
+ +G V+ I +++++VGR+ +N F F+ +
Sbjct: 306 IAEWSTTAMGLAYVSGTITGGIVIEKVGRRKLLLLFTF----LNNLALIAFVFFAKIRIL 361
Query: 532 VQNVSWILLVALIVYIVCYAIGLSTVPYVTIGGDVP 639
+ + + LVALI+Y Y G+ + + VP
Sbjct: 362 IDPMKYGCLVALIIYGYTYGTGVGPISWFISSELVP 397
>AF039042-11|AAC48251.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein199 protein.
Length = 343
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 490 IGTYFYFYDTNKQAVQNVSWILLVALI-VYIVCYAIGLSTVPYV 618
+G Y + T KQ +++V W +L+ I V I Y+ + TVP+V
Sbjct: 35 LGLYCIIFKTPKQ-MRSVKWYMLILHIYVMIFDYSYTIMTVPFV 77
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 215 VIHIAFLLVASVNKSLHDPRFFMSSWTFNSIL 120
+I+ AF L A+ K+LHD F+ +WTF I+
Sbjct: 276 LIYFAFPL-AAFTKALHDVEPFLGNWTFLIIM 306
>Z81508-6|CAB04147.1| 338|Caenorhabditis elegans Hypothetical
protein F20E11.10 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 490 IGTYFYFYDTNKQAVQNVSWILL-VALIVYIVCYAIGLSTVPYV 618
+G Y Y+T +Q ++ V W LL + + V + Y++ L T+P++
Sbjct: 35 LGLYCVLYETPRQ-MKGVKWYLLNLHVSVMLFDYSVTLLTIPFL 77
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 118 KSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLGVFTVQQ 240
K+++L+ E++KN S +LF + + A W T+ QQ
Sbjct: 163 KTLQLSHDENLKNEKSNQELFAKQQDGDAQWETVNKLVDQQ 203
>U39645-7|AAA80364.1| 190|Caenorhabditis elegans Hypothetical
protein C14F11.6 protein.
Length = 190
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 112 ELKSIELNVQEDMKNRGSWSDLFTEATNKKAMWITLG 222
E+ + +++++D G W + NK A WI G
Sbjct: 89 EIFDVAVDIRKDSPTYGKWHGVVLNGDNKHAFWIPAG 125
>Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical
protein F25D7.5 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 241 FCGSAAVVAYSQFIFNCTTGPTILPNGTLEETTRKSIEPYQESIIIGCVQV 393
F G+ +++ QF F C+T P P + + +E Y + ++ CV +
Sbjct: 295 FFGNVSILKNFQFFFRCSTKPNKKPQ-KIPAMIQWMLEGYNANQVVRCVHL 344
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 124 IELNVQEDMKNRGSWSDLFTEAT-NKKAMWITLGVFTVQQFCGSAAVVAYSQFIFNC 291
+ L + ++ +G++S ++ N W L +F F AY+Q+IFNC
Sbjct: 61 VTLRIPQNTGVQGTFSSFYSNLNLNNTENWFPLNIFHTFHF-----EFAYTQYIFNC 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,719
Number of Sequences: 27780
Number of extensions: 350137
Number of successful extensions: 1019
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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