Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0213
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.52 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.52 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.4  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 QFIFNCTTGPTILPNGTLEETTRKSIEP 357
           QF+   T+GP ++ N  + E    S+EP
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEP 204


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 QFIFNCTTGPTILPNGTLEETTRKSIEP 357
           QF+   T+GP ++ N  + E    S+EP
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEP 204


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLV 423
           TRK  E + ES  IG     TCI+ +  V
Sbjct: 695 TRKIPENFNESKFIGFTMYTTCIIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLV 423
           TRK  E + ES  IG     TCI+ +  V
Sbjct: 785 TRKIPENFNESKFIGFTMYTTCIIWLAFV 813


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 337 TRKSIEPYQESIIIGCVQVATCILSVLLV 423
           TRK  E + ES  IG     TC++ +  V
Sbjct: 837 TRKIPEAFNESKHIGFTMYTTCVIWLAFV 865


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 293 PPGLLYCQMEP*KR 334
           PPG  +C++ P KR
Sbjct: 131 PPGRFFCEVRPIKR 144


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 286  NCTTGPTILPNGTLEETTRKSIEPYQESIIIGCVQ 390
            NC  G  I  NG L ++ R        SII  CV+
Sbjct: 1278 NCGKGERIDMNGKLRQSPRLKELVGATSIIKDCVE 1312


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 535 VRLACSYRKSRNTFRLFHSLVLRPKSI 455
           VRLAC +    N+    +  VL+ +SI
Sbjct: 281 VRLACMFDAQTNSMICLNGQVLKRESI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,196
Number of Sequences: 438
Number of extensions: 4514
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)