Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0212
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.28 
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.6  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 4   LFIFCCVLVHFMTHLYTKMSI-DIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVNL 180
           ++ FC   + F TH Y   S+  ++ TF    +N VR  PE    +       W+    L
Sbjct: 298 IYYFCRAFIIFPTHFYCAFSLYPLKSTFY---LNVVRPFPE---RSMGITPMIWNSTRRL 351

Query: 181 ITVW 192
             VW
Sbjct: 352 FVVW 355



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 489 VHIAILTNTSYVSFICIQRCCRAFCITVVM*RLPRKYFFKWCLFIISTNFKYF 331
           VH+ +L    Y  ++ +  CC     T+ +  L   Y+F +C  II     YF
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF-YCALIILLCIYYF 301


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 541 SCSLHSICYLKHTEVITGNIRGHIK 615
           +C L S+CY + +  +  ++R H +
Sbjct: 149 ACGLFSVCYPRVSAQMKADLRSHFR 173


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 307 VSISNGDVKILEISAYDKQTPLK--EIFSWKSLHNY 408
           +++ N D+ +LE  A+ K  PL+  +I  ++++ N+
Sbjct: 543 LNLKNIDLTVLESGAFCKMQPLRTLKIGVYRNIKNF 578


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 523 YG*LHPFGHSICSHCH 476
           YG LH  GH   S+ H
Sbjct: 359 YGDLHNMGHVFISYIH 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,159
Number of Sequences: 336
Number of extensions: 4576
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)