Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0212
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 33 0.033
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 33 0.058
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 31 0.23
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 29 0.54
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 28 1.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 28 1.6
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 28 1.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.6
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 2.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.9
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 3.8
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 3.8
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.0
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 26 6.6
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 6.6
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 6.6
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 8.8
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 8.8
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 8.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 8.8
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 33.5 bits (73), Expect = 0.033
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Frame = +1
Query: 238 ALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYD-KQTPLKEIFSWKSLHNYGN 414
A K ++++ + +N++ + SNG V + YD Q L E +S K H
Sbjct: 7 AAIKQKFENEIFDLACFGENQVLLGFSNGRVSSYQ---YDVAQISLVEQWSTKR-HK--- 59
Query: 415 TKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRT--IKGADSCSLHSICYLKHTEVI 588
C S++ + S+G DG + I G V+ + S +S+ +++
Sbjct: 60 KSCRNISVNESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQWIENDMV 119
Query: 589 --TGNIRGHIKIWDLRSE 636
TG+ G + +WD R+E
Sbjct: 120 FATGDDNGCVSVWDKRTE 137
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 32.7 bits (71), Expect = 0.058
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRS 633
+ S+ +D + + R + +TI+ + +I + T+V G I G IKIWDLR+
Sbjct: 151 LTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQ-QGTQVFIGGIDGAIKIWDLRN 208
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 30.7 bits (66), Expect = 0.23
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = +1
Query: 310 SISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDGNVN 489
+I + VK L+ SA + K L Y N CS+ S D YEG + V
Sbjct: 372 TICSNAVKNLKCSANGTPSGSKISQVLSELCYYDNKACSSISSDPYEGTYGNYTGCTGVQ 431
Query: 490 ILSGRRGEVNRTIKGADSCSLHSICYLK 573
LS + GADSCS + LK
Sbjct: 432 QLSIALNAYTQD-HGADSCSWGGVGELK 458
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +1
Query: 535 ADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINH 705
A C +S+ K +V +++ ++ W ++ + K ++ GDE+A + H
Sbjct: 165 AGLCGEYSLAIRKFEQVARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEH 221
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 220 EVEYPRALTKYPVDDDVTQIKFTEKNKIA 306
++EY + + ++ V DDV + FT NK A
Sbjct: 513 DIEYGKIVDEWKVHDDVPLVTFTPDNKFA 541
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 247 KYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPL 372
+Y +D + TE IAV+ + GD+++ + + +T L
Sbjct: 576 QYATKNDFSSAATTENGYIAVASNKGDIRLFDRIGVNAKTAL 617
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 304 AVSISNGDVKILEISAY-DKQTPLKEIFSWKSLHNYGNT 417
A+S S G I +S Y + T +K I + S H YGNT
Sbjct: 399 AISYSKGSCVIRMVSKYVGEDTFIKGIQKYISKHRYGNT 437
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 298 KIAVSISNG--DVKIL--EISAYDKQTPLKEIFSWKSLHNYGNTKCSATSL 438
++ + +S G D+K+L ++ YD P + + WK+L N K S L
Sbjct: 510 RLHLKLSKGIMDIKVLTHQLMLYDLYPPAHQTYLWKALERLVNEKVSLGEL 560
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 613 KIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGS 750
+++DLR+ D +L G E C+ HP P+++ G GS
Sbjct: 275 RVFDLRAMKDVR----VLRGHEKDVNCVTWHPLYPNLLTTGGSDGS 316
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 341 SSIFTSPLDIETAILFFSVNFICVTSSST 255
S I + P+ +LF+ + FI V SSST
Sbjct: 144 SDITSRPMTYTLVLLFYVIGFIVVASSST 172
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 493 LSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKI 618
+S RR +V I DS H I + K EVIT IR +K+
Sbjct: 634 VSTRRSDVKPNIPITDS---HKILFKKSIEVITSKIRRLLKL 672
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 344 ISSIFTSPLDIETAILFFSVNFICVTSS 261
I +I+ LD++ ++LF S NF +T S
Sbjct: 18 IDNIYVLELDLDGSVLFASTNFSQITGS 45
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 433 SLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHI 612
+LD + +AS DG + I R G R+ G + + S+ + + +G+ +
Sbjct: 501 ALDCLDAAVASGTVDGLIRIWDLRIGLPVRSFIG-HTAPISSLQF-DSNHLYSGSYDNSV 558
Query: 613 KIWDLRS 633
+IWDLRS
Sbjct: 559 RIWDLRS 565
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 583 VITGNIRGHIKIWDLRSEVDKPAASFL 663
V +G + G I+IWDLR + P SF+
Sbjct: 509 VASGTVDGLIRIWDLR--IGLPVRSFI 533
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 531 FDCTVDFTPSATQYVHIAILTNTSYVSF-ICIQRCCRAFCITVVM*RLPRKYFFKW 367
F C ++ S Q VH +T Y+S+ C F + +++ RL ++Y KW
Sbjct: 382 FYCWDNYYYSFLQVVHYTSITAAGYISYTYSFTSCATGFFLGILI-RLTKRY--KW 434
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 217 EEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSISN 321
E+V+ A+ K P DDD+ +I K I ++ +N
Sbjct: 62 EKVQLKSAVLKAPFDDDLMKISPMIKEDIDIAFNN 96
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 409 GNTKCSATSLD-TYEGDIASIGEDGNVNI 492
G+TK T++D + EG +ASI +DG+V +
Sbjct: 435 GHTK-DVTAVDWSSEGQLASISDDGSVRV 462
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 373 KEIFSWKSLHNYGNTKCSA-TSLDTYE 450
+EIF WKSL +TK SA L YE
Sbjct: 769 REIFFWKSLERNPSTKLSAQKGLYAYE 795
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 406 YGNTKCSATSLDTYEGDIASIGEDGN---VNILSGRRGEVNRTIKGADS 543
YGN CS + E DI + GN + L G +G N GA S
Sbjct: 398 YGNADCSCWTTGCGEFDIFEVLSTGNEKMIPTLHGSQGSSNGNGGGAGS 446
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 583 VITGNIRGHIKIWDLRSEVDKPAASFL--LAGDELAATCIINHPTQPHIVLAGSES 744
V++G+ G IWD K AS L + GD A I HP P + ++G +S
Sbjct: 686 VMSGSDDGRFFIWD------KLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDS 735
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 572 FK*QMECNEQLSAPLIVRLTSPLRPLNMFTLPSSPILAMSPSYVSKDVAEH 420
F Q E +L+A L S L+P + L + +PS + +D+AEH
Sbjct: 154 FSAQKERRGKLAATRNTLLLSTLKPSTSWVLWLDSDIVETPSTLIQDLAEH 204
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 680 NSSPASKNDAAGLSTSDRRSQILMW 606
++S SK D GLS + RR+QIL +
Sbjct: 5 STSTDSKLDNLGLSVTSRRNQILFY 29
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 130 AETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKF-TEKNKIA 306
++TK L +D + + ++ E +E Y +Y ++ ++ +F +EK+
Sbjct: 589 SDTKGGLANFENDSLEELERLIQQNNAEQDEPSYKFHKYEYSSEESGSEDEFKSEKDTKG 648
Query: 307 VSISNGDVKILEISAYDKQTP 369
ISN D +E + DK TP
Sbjct: 649 YVISNDDSTQVEEDSEDKSTP 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,984
Number of Sequences: 5004
Number of extensions: 71993
Number of successful extensions: 220
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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