Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0212
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 44 1e-04
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363... 34 0.11
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 34 0.14
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 32 0.56
01_01_0925 - 7306881-7308486,7308797-7308906 32 0.56
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575... 31 0.74
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 31 0.74
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582... 30 1.7
04_04_0216 - 23691007-23691187,23691273-23691381,23691627-236917... 30 1.7
01_05_0610 - 23636097-23638958 30 2.3
05_01_0514 - 4270936-4272084 29 3.0
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 29 3.0
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 29 5.2
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 6.9
04_04_0221 - 23710739-23710964,23711050-23711158,23711371-237114... 28 6.9
09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175... 28 9.2
05_07_0039 - 27239362-27239478,27240570-27241463 28 9.2
05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053... 28 9.2
02_04_0149 + 20201674-20201891,20202009-20202111,20202658-202027... 28 9.2
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = +1
Query: 196 FESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYD----KQ 363
+ + D + + + D Q+ K+ IA+ +S G V ++ S Y
Sbjct: 407 YMQIEVDNPITRAMSSQSFGQDHGSPQVMTVHKSYIALGMSKGSVIVIP-SKYSIHQADD 465
Query: 364 TPLKEIFSWKSLHNYGN-TKCSATSLD-TYEGDIASIG-EDGNVNILSGRRGEVNRTIKG 534
T K +F W N G T+ S T++ +GD+ +G DG++ I ++G + I G
Sbjct: 466 TDAKMLFFW----NQGEKTQSSVTAMCFNQQGDLLLVGYNDGHMTIWDVQKGTAAKVIYG 521
Query: 535 ADSCSLHSICYLKHTEVITGNIRG 606
+ + C+++ ++ ITG+ +G
Sbjct: 522 EHTAPVVHACFIRQSKAITGDSKG 545
>06_01_0504 +
3632108-3632281,3633532-3633699,3633797-3633883,
3634766-3634876,3635114-3635205,3635288-3635393,
3635475-3635561,3637796-3638209
Length = 412
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/111 (25%), Positives = 51/111 (45%)
Frame = +1
Query: 301 IAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDG 480
+ V++SN D + E +D +T F + +Y N + TS+ +A +G+D
Sbjct: 214 LRVTVSNNDCGVRE---FDMET-----FQLLNHFSY-NWPVNHTSVSPDRKLLAVVGDDR 264
Query: 481 NVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRS 633
+ ++ R G+V T+ G S S + TGN ++WD+R+
Sbjct: 265 DALLVDSRNGKVTSTLVGHLDYSFASAWHPDGRTFATGNQDKTCRVWDVRN 315
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +1
Query: 424 SATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLK-HTEVITGNI 600
+A +++ EG + + D G+ T KG LHSI + + +V+TG+
Sbjct: 172 NAIAINKQEGSVYAAAGDACAYCWDVESGKCKMTFKGHTDY-LHSIAVREANRQVVTGSE 230
Query: 601 RGHIKIWDLRS----EVDKPAASFLLAGDELAATCI 696
G +IWD RS +V +P + + G ++ I
Sbjct: 231 DGTARIWDCRSGKCTQVIRPVKNKIFEGSWVSCVAI 266
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRS 633
+AS D + I + G TI + + S+ ++ + +G+ GH+++WD+RS
Sbjct: 328 LASSSNDHTIKIWDLQSGFCKSTIMSGSNAN--SLAFIDGVTLCSGHRDGHLRLWDIRS 384
>01_01_0925 - 7306881-7308486,7308797-7308906
Length = 571
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 592 GNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGS 750
G+ G++ +W+ + +PA + L G LA C+ + +V++GSE +
Sbjct: 373 GSSDGYVNVWEKEASAGRPAHAGFLKGHRLAVFCLAS-GCGGRVVVSGSEDAT 424
>11_01_0699 -
5757410-5757458,5757760-5757831,5758084-5758152,
5758329-5758477,5758568-5758699,5758784-5759109,
5759330-5759399,5759684-5759738,5760322-5760377,
5760500-5760700,5761466-5761651,5761756-5761906,
5761978-5762206,5762321-5762582,5762858-5762959
Length = 702
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 583 VITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGS 738
+ITG++ +IWD +S +L G TC+ +HP P I+L GS
Sbjct: 580 IITGSLDKTARIWDCKSRT----CVQILIGHMDCVTCVCSHPDLP-ILLTGS 626
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +1
Query: 433 SLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHI 612
++ + G I S +D +V + + ++ +KG D+ + S+ L V+T + G +
Sbjct: 959 AISSDRGKIVSGADDQSVIVWDKQTFKLLEELKGHDA-PVSSVRMLSGERVLTASHDGTV 1017
Query: 613 KIWDLRSE 636
K+WD+R++
Sbjct: 1018 KMWDVRTD 1025
>08_02_0014 +
11255063-11255167,11256589-11256858,11257882-11258285,
11259011-11259242
Length = 336
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/100 (22%), Positives = 37/100 (37%)
Frame = +1
Query: 448 EGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDL 627
E + G D ++ R V R + SL + + T V G+ GH+ W +
Sbjct: 35 EAKVRDDGFDARTELVL-RPSNVRRLVSADRIPSLRILPLVDRTVVAAGSNVGHVGFWVV 93
Query: 628 RSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESG 747
+ D F + I+ H +PH + + S G
Sbjct: 94 DDDGDDAHRVFEYMPHLSSVGAIVAHAAKPHKIYSCSHGG 133
>04_04_0216 -
23691007-23691187,23691273-23691381,23691627-23691729,
23691829-23691860,23692012-23692229,23692299-23692420
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 112 WIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEY 231
+I E+Y F+T + DEVN T+ E++N++ +EY
Sbjct: 143 YIKENYGNPTIFITENGVDEVNNKTMPLKEALNDNTRIEY 182
>01_05_0610 - 23636097-23638958
Length = 953
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 517 NRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPAASFL----LAGDELA 684
+ + G S+ S+ YL H + N+ G I + ++ PA+ ++ L G L
Sbjct: 818 HNVLSGGIPSSIASLTYLSHMNLSYNNLSGRIPAGNQLDILEDPASMYVGNIDLCGHPLP 877
Query: 685 ATCIINHPTQ 714
C IN T+
Sbjct: 878 NNCSINGDTK 887
>05_01_0514 - 4270936-4272084
Length = 382
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Frame = +1
Query: 13 FCCVLVHFMTHLYTKMSIDIQG-TFVSQKINKVR-------WIPED--YAETKCFLTGSW 162
FC ++H +++ + +S+D++G T+ + K+ K+ W+P +E K + +
Sbjct: 218 FCNGMLHLVSYQRSIVSVDVEGRTWRTTKVPKMEGVEEVRDWLPGSICQSEGKLYYLSQY 277
Query: 163 DDEVNLITVWTFESVNEDE 219
+ +++W E ++DE
Sbjct: 278 NTVPISLSIWLLEDYSKDE 296
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 676 ELAATCIINHPTQPHIVLAGSESG 747
+L C++ HP QPH+V G+ G
Sbjct: 280 KLRVYCMVAHPLQPHLVATGTNIG 303
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 448 EGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDL 627
EG + S G D V + +GEV T+KG S + + + ++I+ ++ IK+W L
Sbjct: 77 EGGLVSGGMDTLVLLWDLHKGEVVETMKGHTS-QVTGLAVDNNGDIISSSMDCTIKVWAL 135
Query: 628 RSE 636
+
Sbjct: 136 TGQ 138
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +1
Query: 289 EKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEG--DIA 462
+ N+ + NG + +P +IF K L+ Y N C + G ++
Sbjct: 449 DANEKEIGQCNGGTPKRHATKIHTVSPETDIFLEKPLNKYSNQLCDRNEEEDDSGWETVS 508
Query: 463 SIGEDGNVNILSGRRGEVNRTIKGADS 543
+ E G+ N G VN G D+
Sbjct: 509 HVDEQGSSNSPDGSEPSVNGFCGGNDA 535
>04_04_0221 -
23710739-23710964,23711050-23711158,23711371-23711473,
23711568-23711599,23711707-23711924,23711994-23712109,
23714696-23714843,23715713-23715800,23715935-23716019
Length = 374
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 112 WIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEY 231
++ E+Y ++T + DEVN T+ E++ +D +EY
Sbjct: 248 YVKENYGNPTIYITENGVDEVNNKTMPLEEALKDDTRIEY 287
>09_01_0113 +
1751204-1751507,1751791-1752039,1753136-1753398,
1755192-1755357,1755445-1755534,1756376-1756674,
1757022-1757231
Length = 526
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 181 ITV-WTFESVNEDEEVEYPRALTKYPVDDDVTQ 276
IT+ WTF+ NE E L + PVDD+V +
Sbjct: 453 ITIRWTFKKFNEGNRREILDPLLEDPVDDEVLE 485
>05_07_0039 - 27239362-27239478,27240570-27241463
Length = 336
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Frame = +1
Query: 385 SW-KSLHNYGNTKCSA-TSLDTYEGDI--ASIGEDGNVNILSGRRG--------EVNRTI 528
SW +S+ + T C T L+ + G + ++ DG++ G+ G E
Sbjct: 187 SWDRSVKVWNLTNCKLRTKLEGHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLTEGKMLY 246
Query: 529 KGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEV 639
K +HS+C+ + + +KIWDL S++
Sbjct: 247 KLDAGAIIHSLCFSPNRYWLCAATEDSVKIWDLESKL 283
>05_04_0328 -
20303330-20303440,20304123-20304942,20305170-20305368,
20305417-20305954
Length = 555
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 580 LCVLNNKWNAMNSYQPL*LYG*LHPFGHSICS 485
L +L + WN ++++P Y HP HSI S
Sbjct: 522 LQILKSLWNINSAFEPSTQYAYAHPVLHSIAS 553
>02_04_0149 +
20201674-20201891,20202009-20202111,20202658-20202765,
20202882-20202991,20203170-20203277,20203667-20203733,
20204044-20204078,20204456-20204501,20204692-20204844
Length = 315
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Frame = +1
Query: 307 VSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYG--NTKCSATSLDTYEGDIASIGEDG 480
V+ S+ + K++ D+Q ++ S + + + N++ ++ + + + S G D
Sbjct: 69 VNSSSDNAKLVSCGG-DRQVFYWDVASARVIRKFRGHNSEINSVKFNEFNTVVVSAGYDR 127
Query: 481 NVNILSGRRGEVNRTIKGADSC--SLHSICYLKHTEVITGNIRGHIKIWDLR 630
V R + + I+ D+ S+ S+ L +TE+I G++ G I+ +D+R
Sbjct: 128 TVRAFDCR-SQSSDPIQTIDTFQDSVMSV-NLTNTEIIAGSVDGTIRTFDIR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,507,922
Number of Sequences: 37544
Number of extensions: 411835
Number of successful extensions: 1055
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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