BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0212 (754 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 7e-24 SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) 55 5e-08 SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 38 0.009 SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) 37 0.015 SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11 SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 31 1.3 SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 29 3.1 SB_57395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10) 29 4.1 SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 29 5.4 SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 29 5.4 SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) 29 5.4 SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4 SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4 SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 28 9.4 >SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 424 Score = 107 bits (258), Expect = 7e-24 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Frame = +1 Query: 67 DIQGTFVSQKINKVRWIPEDYAETK---CFLTGSWDDEVNLITVWTFESVNEDEEVEYPR 237 +I +V KI+K RW + F TG WDD N ++VW E + + P Sbjct: 6 EIVAKYVGHKISKARWASARQGSLEPSDTFTTGGWDDHRNRLSVWQIEDIPAE-----PG 60 Query: 238 ALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNT 417 A+T ++ + +A + GDV +++ Y +Q W+ +H + + Sbjct: 61 AVTGTTPNEPIL---------VADTEHIGDVTDIQV-IYIEQV-------WERMHFHLDQ 103 Query: 418 KCSATSLDTYE--GDIASIGEDGNVNIL-SGRRGEV---NRTIK-GADSCSLHSICYLKH 576 C TS+ T + DI + GEDG +N+L +G + + + K ADS S++ I + Sbjct: 104 SCPCTSVATSQTSSDIITAGEDGRLNVLKTGNQNPIRFYDLVFKDSADSTSINDITFTTT 163 Query: 577 TEVITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESG 747 +EV+ G +K+WDLR+ +KP+ + LL+GD + C+ HPTQPH++ AG + G Sbjct: 164 SEVVGVTFSGQVKMWDLRNRNNKPSRTMLLSGDRVPLLCVDKHPTQPHLLAAGGQDG 220 >SB_36049| Best HMM Match : WD40 (HMM E-Value=2e-07) Length = 711 Score = 55.2 bits (127), Expect = 5e-08 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = +1 Query: 616 IWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESG 747 +WDLR+ +KP+ + LL+GD + C+ HPTQPH++ AG + G Sbjct: 1 MWDLRNRNNKPSRTMLLSGDRVPLLCVDKHPTQPHLLAAGGQDG 44 >SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) Length = 1213 Score = 37.9 bits (84), Expect = 0.009 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 8/121 (6%) Frame = +1 Query: 409 GNTKCSATSLDTYEGDIASIGE----DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKH 576 G + + SLD +GD G+ DGNV G G+ + +++ D + S Sbjct: 103 GASHNAVNSLDDGDGDGGGSGDSDYGDGNVG---GDNGDFDYSLQDGDEW-MGSAFAAHP 158 Query: 577 TEV----ITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSES 744 TE +T + IK+WDLR+ + P A ++ G E + C +H Q H +AGS + Sbjct: 159 TEAYDLFLTAAVTDGIKLWDLRT--NNPCARYIATGSEDRSVC-ASH--QYHACVAGSVT 213 Query: 745 G 747 G Sbjct: 214 G 214 >SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22) Length = 834 Score = 37.1 bits (82), Expect = 0.015 Identities = 18/77 (23%), Positives = 35/77 (45%) Frame = +1 Query: 403 NYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTE 582 N+ C A + + + +D ++ + G + IK A SC ++ + + Sbjct: 87 NHHKKPCRALAFSKDGLHLFTASKDKSLQAIDMNSGSIAHAIKKAHSCPVNCLKVISDHL 146 Query: 583 VITGNIRGHIKIWDLRS 633 V TG+ G +K+WD R+ Sbjct: 147 VATGDDEGSVKVWDSRT 163 >SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2656 Score = 34.3 bits (75), Expect = 0.11 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Frame = -2 Query: 531 FDCTVDFTPSATQYVHIAILTNTSYVSFICIQRCCR-AFCITVVM*RLPRKYFFKWCLFI 355 + CT+ + ++++ F+ + C A CI + L Y C+F Sbjct: 1815 YPCTICIFALSVSLHYLSLCAVCILALFVSLSYLCLCAICIFALSVSLRYLYLCAICIFA 1874 Query: 354 ISTNFKYFYITIRY*NGYFVFFREFYLCNIIIY 256 +S + +Y Y+ ++ R YLC I ++ Sbjct: 1875 LSVSLRYLYLCAFCIFALYLSLRFLYLCAIFVF 1907 Score = 31.9 bits (69), Expect = 0.57 Identities = 22/70 (31%), Positives = 29/70 (41%) Frame = -2 Query: 417 CITVVM*RLPRKYFFKWCLFIISTNFKYFYITIRY*NGYFVFFREFYLCNIIIYWILGKG 238 CI + L YF C+F +S + +Y + V R YLC I I+ L Sbjct: 1699 CIFALSVSLRYLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYLYLCAICIF-ALSVS 1757 Query: 237 TRIFYLFVFV 208 YL VFV Sbjct: 1758 LHYLYLCVFV 1767 Score = 31.1 bits (67), Expect = 1.0 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = -2 Query: 423 AFCITVVM*RLPRKYFFKWCLFIISTNFKYFYITIRY*NGYFVFFREFYLCNIIIYWILG 244 AFCI + L Y C+F +S + +Y + V R YLC I I+ L Sbjct: 1971 AFCIFALSVSLRYLYLCAICIFALSVSLRYICLYAICIFALSVSLRFLYLCAICIF-ALS 2029 Query: 243 KGTRIFYL---FVF 211 R YL FVF Sbjct: 2030 VSLRFLYLCAIFVF 2043 Score = 30.7 bits (66), Expect = 1.3 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -2 Query: 369 WCLFIISTNFKYFYITIRY*NGYFVFFREFYLCNIIIYWILGKGTRIFYLFVF 211 +C+F +S + +Y + FV R YLC I I+ L R YL F Sbjct: 1921 FCIFALSVSLRYLCLCAICIFAVFVSLRYLYLCGIRIF-ALSVSLRFLYLCAF 1972 Score = 29.5 bits (63), Expect = 3.1 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = -2 Query: 432 CCRAFCITVVM*RLPRKYFFKWCLFIISTNFKYFYITIRY*NGYFVFFREFYLCNIIIY 256 C A C+ + L Y C+F +S + Y Y+ + FVF LC I ++ Sbjct: 1728 CLCAICVFALSVSLRYLYLCAICIFALSVSLHYLYLCV------FVFLPYLCLCAIFVF 1780 >SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) Length = 884 Score = 30.7 bits (66), Expect = 1.3 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = +1 Query: 583 VITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735 V++G+ GH+ +WD ++E +FL A C+ HP+ P + +G Sbjct: 142 VVSGSDCGHVFLWDKQTE---EIVNFLDADATGVVNCLEPHPSAPVLATSG 189 >SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1308 Score = 30.3 bits (65), Expect = 1.8 Identities = 22/91 (24%), Positives = 43/91 (47%) Frame = +1 Query: 475 DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPAA 654 +GN+ I G +KG S + S+ K + +G+ +++WDLRS+ Sbjct: 1126 NGNIQISDCTTGNTIGQLKGHSS-HIMSVYAAKDDIIASGSNDNTVRLWDLRSQ---RCI 1181 Query: 655 SFLLAGDELAATCIINHPTQPHIVLAGSESG 747 + GD ++ +N P+ ++++G E G Sbjct: 1182 DAIATGDSCVSSVCVN-PSGT-LLVSGHEDG 1210 >SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) Length = 1764 Score = 29.5 bits (63), Expect = 3.1 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = +1 Query: 367 PLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSC 546 PL IF W + K T + +AS DGN ILS RR + N I+ Sbjct: 1519 PLDVIFIWDVVRRQMLFKVDRTGYARFVLTLASFTPDGNEFILSIRRDDKNDYIRHPSVW 1578 Query: 547 SLHS 558 +H+ Sbjct: 1579 HVHT 1582 >SB_57395| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 29.1 bits (62), Expect = 4.1 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +1 Query: 151 TGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFT 288 T SW E+ + T++ F D E+ YP ++ V+ V I +T Sbjct: 238 TLSWIPELTVFTIFAFAPRYVDIEIAYPASVAMVTVNSAVNPIIYT 283 >SB_10356| Best HMM Match : WD40 (HMM E-Value=6e-10) Length = 283 Score = 29.1 bits (62), Expect = 4.1 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +1 Query: 475 DGNVNILSGRRGEVN--RTIKGADSCSLHSICYLKHTE--VITGNIRGHIKIWDLRSEV 639 DG + I + +N TI +D +H++ Y H V TG+ G IKIW L E+ Sbjct: 205 DGRLLIYDMKVNHINPVTTIDVSDKKPVHTLEYNIHRRQLVATGDSEGVIKIWRLSDEL 263 >SB_50716| Best HMM Match : WD40 (HMM E-Value=0) Length = 494 Score = 28.7 bits (61), Expect = 5.4 Identities = 22/129 (17%), Positives = 54/129 (41%) Frame = +1 Query: 265 DVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDT 444 D++ + ++ AV++ + D K + ++ D+ + + + + + L Sbjct: 302 DISLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHRRGIACLQY 361 Query: 445 YEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWD 624 + + S D + + G R ++G + L + +++G G IK+WD Sbjct: 362 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWD 419 Query: 625 LRSEVDKPA 651 L++ +D A Sbjct: 420 LQAALDPRA 428 >SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1894 Score = 28.7 bits (61), Expect = 5.4 Identities = 17/34 (50%), Positives = 18/34 (52%) Frame = -3 Query: 680 NSSPASKNDAAGLSTSDRRSQILMWPRMLPVITS 579 N+SP S A LSTSDR S IL P TS Sbjct: 1641 NTSPESLPAAEPLSTSDRSSSILPEPSTTDATTS 1674 >SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) Length = 416 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Frame = -1 Query: 511 HPFGHSICSHCHPHQY*LCLLHMYPKMLQSILYYRSYVKTSKKIFL*VVFVYHKH*FQ-- 338 HP I H HP + + H +P I+ + + +S ++ ++H H Sbjct: 43 HPSSSIIIHHHHPSSSIIIIHHHHPSSSSIIIIHHHHPSSSS-----IIIIHHHHPSSSS 97 Query: 337 -VFLHHH 320 + +HHH Sbjct: 98 IIIIHHH 104 >SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10) Length = 841 Score = 28.7 bits (61), Expect = 5.4 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Frame = +1 Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVI-TGNIRGHIKIWDLRS 633 +AS D + I++ G+ RT++G + E++ +G + G ++IWDL Sbjct: 1 MASTHGDHTIRIVNSYTGKCLRTLQGHPRTPWCIAFHPSADELVASGCLGGEVRIWDL-- 58 Query: 634 EVDKPAASFLLAGDELAATCIINHPTQPHIVLAGS 738 K D + HPT +++A S Sbjct: 59 ---KGGCEMYTPPDRAVIASLAFHPTDKVLLIATS 90 >SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1803 Score = 28.3 bits (60), Expect = 7.1 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Frame = +1 Query: 541 SCSLHSICYLKHTE--VITGNIRGHIKIWDLRSEVDKPAASFLLAGDELAATCIINHPTQ 714 SC + + C H V +G I++W + VD+ S GD+L CI P Sbjct: 1548 SCGVRA-CTFSHDASLVASGGDELKIRVWSRETGVDQHVLS---CGDKLLPCCIRFSPND 1603 Query: 715 PHIVLAGSES 744 I+ G S Sbjct: 1604 KQIIAVGEYS 1613 >SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 801 Score = 28.3 bits (60), Expect = 7.1 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 1/163 (0%) Frame = +1 Query: 148 LTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSIS-NG 324 +TGS D I VW F + ++++Y +D+ V + F+ +++ S +G Sbjct: 230 VTGSVD---GFIEVWNFTTGKIRKDLKYQAQENFMMMDETVLCLTFSRDSEMLASGGQDG 286 Query: 325 DVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGR 504 +K+ ++ QT + + ++ H+ G T C S D + + S D + + + Sbjct: 287 KIKVWKL-----QTG-QCLRRFERAHSKGVT-CVTFSRDASQ--LLSGSFDMTIRMHGLK 337 Query: 505 RGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRS 633 G+ + +G S I +I+ + G IKIW+++S Sbjct: 338 SGKTLKEFRGHTSFVNDVIFTADAHHIISASSDGTIKIWNIKS 380 >SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1554 Score = 28.3 bits (60), Expect = 7.1 Identities = 43/211 (20%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Frame = +1 Query: 91 QKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDV 270 Q++NK+ E+ + K +T ++V ++ +T V + + R +TK+ + + Sbjct: 972 QEVNKITVKTEEVKDVK--ITSK--NQVVVMPSFTLLLVYDLSTAKLVREITKFKMQEGQ 1027 Query: 271 TQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLK-EIFSWKSLHNYGNTKCSATSLDTY 447 +++ T+ + AVS ++ I ++ + L+ IF K + NT S T D Sbjct: 1028 CKLQITDDGRKAVSTDMFEILITDLETGEVTPCLRSSIFRLKMITRDANTILS-TGQDFL 1086 Query: 448 EGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIR--GHIKIW 621 ED + N+ + + K ADS + + K + NI+ + +W Sbjct: 1087 LRVYDKSREDDDENVQDTNVVQY-QEYKIADSITTMTPSVDKRHVIAMANIQLSNQMTLW 1145 Query: 622 DL----RSEVDKPAASFLLAGDELAATCIIN 702 D + K A+ L+G+ + +T +++ Sbjct: 1146 DTFTGEKVRHTKGNANISLSGNPIRSTLMLH 1176 >SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 644 Score = 28.3 bits (60), Expect = 7.1 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +1 Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDL 627 I S D ++ + G+ T+ G S L S L++ +++GN +KIWD+ Sbjct: 492 IVSGSLDTSIRVWHAETGQCLHTLVGHQS--LTSGMELRNNTLVSGNADSTVKIWDI 546 Score = 28.3 bits (60), Expect = 7.1 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +1 Query: 397 LHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKH 576 LH + + ++ + S D V I G+ +T+ G + C Sbjct: 512 LHTLVGHQSLTSGMELRNNTLVSGNADSTVKIWDITTGQCLQTLAGPNKHQSAVTCLQFS 571 Query: 577 TE-VITGNIRGHIKIWDLRS 633 ++ VIT + G +KIWDL++ Sbjct: 572 SKFVITSSDDGTVKIWDLQT 591 >SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1114 Score = 27.9 bits (59), Expect = 9.4 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +1 Query: 397 LHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCS 549 L Y + +CS+T T+ GD GE+ + + E T +G S + Sbjct: 757 LSTYYDEQCSSTMAVTFTGDSHRSGEEEYTLVTTNLHHECTDTFRGTSSAA 807 >SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 297 Score = 27.9 bits (59), Expect = 9.4 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +1 Query: 583 VITGNIRGHIKIWDLRSEVDKPAASFL----LAGDELAATCIINHPTQPHIVLAGSESGS 750 + TG +IWDLR ++D L + C+ HP Q +++ G +SG+ Sbjct: 97 MFTGGEDSSARIWDLRKQIDFSRTRSLQCQRVFQVNAPVNCVALHPNQGELIV-GDQSGA 155 >SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0) Length = 446 Score = 27.9 bits (59), Expect = 9.4 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = +1 Query: 397 LHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCS 549 L Y + +CS+T T+ GD GE+ + + E T +G S + Sbjct: 352 LSTYYDEQCSSTMAVTFTGDSHRSGEEEYTLVTTNLHHECTDTFRGTSSAA 402 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.317 0.135 0.408 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,177,834 Number of Sequences: 59808 Number of extensions: 505803 Number of successful extensions: 1228 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1209 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2046258890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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