Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0212
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr... 31 0.88
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 1.2
AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024214-16|ABA00187.1| 343|Caenorhabditis elegans Hypothetical... 30 2.0
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 29 2.7
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 29 2.7
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 29 3.5
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 29 3.5
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 29 4.7
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 28 6.2
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 28 6.2
AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.2
AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 523 TIKGADSC-SLHSICYLKHTEVITGNIRGHIKIWDLRS 633
T +G D ++ S+C+ ++ +V+TG+ G I IWD R+
Sbjct: 494 TFEGRDKPKTVLSMCFGENDQVVTGDSNGTISIWDPRT 531
>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
protein D2005.4 protein.
Length = 1188
Score = 31.1 bits (67), Expect = 0.88
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +1
Query: 79 TFVSQKINKVRWIPEDYAETKCFL-TGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYP 255
TF+++ + R+ +CF+ G W D N+++VW E ++ E++ +A+ +
Sbjct: 242 TFLTEVLKHARFCLGLACCERCFIHIGQWHDRRNILSVWGHE-IDPLLELKTIKAIFE-E 299
Query: 256 VDDDVTQIKFTEKNKIAVSISNGDVKILEISAYDKQT 366
+ D T+ + E +A + D + + A D QT
Sbjct: 300 IKDSFTKSEGIESRLLAEAHKIFDFMLPALEASDTQT 336
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 478 GNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKP 648
G + IL + G V R + S + SI L H ++I+ +I+G + IW+L + D P
Sbjct: 1229 GCILILDAQNGGVVRELF-MHSSEVLSIMSLVHNKMISCDIQGKMVIWELFGDDDTP 1284
>AF099922-5|AAK21406.1| 401|Caenorhabditis elegans Hypothetical
protein F56F11.2 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 196 FESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNK-IAVSISNGDVKILEISAYDKQTPL 372
F+ VN + +V R L K+P+DD+VT++ + +K V + D I+ I K L
Sbjct: 280 FDHVNREIQV---RLLAKFPLDDEVTRMFYLIASKEHHVFLGVYDTAIVHI----KSPKL 332
Query: 373 KEIFSWK 393
+EI W+
Sbjct: 333 EEIVGWR 339
>AC024214-16|ABA00187.1| 343|Caenorhabditis elegans Hypothetical
protein Y77E11A.16 protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 82 FVSQKINKVRWIPEDY-AETKCFLTGSWDDEVNLITVW 192
F +++ K +W P DY A T ++TGS+ +NLI ++
Sbjct: 2 FYLEEVAKQKWSPYDYAASTFWWITGSFAIPLNLILIY 39
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +1
Query: 265 DVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDT 444
D+T + ++ AV++ + D + + ++ D+ + + + + + + L
Sbjct: 334 DITIRRVLVGHRAAVNVVDFDDRYIVSASGDRTIKVWSMDTLEFVRTLAGHRRGIACLQ- 392
Query: 445 YEGDIASIGE-DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIW 621
Y G + G D + + G R ++G + L +++G G IK+W
Sbjct: 393 YRGRLVVSGSSDNTIRLWDIHSGVCLRVLEGHEE--LVRCIRFDEKRIVSGAYDGKIKVW 450
Query: 622 DLRSEVDKPAAS 657
DL++ +D A S
Sbjct: 451 DLQAALDPRALS 462
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Frame = +1
Query: 265 DVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDT 444
D+T + ++ AV++ + D + + ++ D+ + + + + + + L
Sbjct: 334 DITIRRVLVGHRAAVNVVDFDDRYIVSASGDRTIKVWSMDTLEFVRTLAGHRRGIACLQ- 392
Query: 445 YEGDIASIGE-DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIW 621
Y G + G D + + G R ++G + L +++G G IK+W
Sbjct: 393 YRGRLVVSGSSDNTIRLWDIHSGVCLRVLEGHEE--LVRCIRFDEKRIVSGAYDGKIKVW 450
Query: 622 DLRSEVDKPAAS 657
DL++ +D A S
Sbjct: 451 DLQAALDPRALS 462
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +1
Query: 337 LEISAYDKQTPLKEIFSWKSL-HNYGNTKCSATSLDTYEGDIASIG-EDGNVNILSGRRG 510
L + +D + ++ + K L + G++K A +G +A G D + R G
Sbjct: 311 LATACFDSTWRMYDLTTKKELLYQEGHSKSVADVAFHPDGSVALTGGHDCYGRVWDMRTG 370
Query: 511 EVNRTIKGADSCSLHSICYLKHT-EVITGNIRGHIKIWDLR 630
+ G +HS+ ++ + E+ITG+ +K+WDLR
Sbjct: 371 RCIMFLDGHTK-EIHSVEWMPNGYEMITGSSDNSMKVWDLR 410
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 76 GTFVSQKINK--VRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTK 249
GT S++I ++ PE + + + +E N ++V + + + DEE LT
Sbjct: 297 GTTASRQIRAPVIKTEPESFTQRSLYQPSVILNE-NPLSVGSVKQEDVDEETLLAEQLTT 355
Query: 250 YPVDDDVTQIKFTEKNKIAVSISNGDVK 333
+ + V Q++ TEK +AVS +V+
Sbjct: 356 --IQNSVGQVEVTEKQTVAVSSRKREVE 381
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 55 KMSIDIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVE 228
K S+ ++ +FV + WI +D A C+ E++ + FE V +E E
Sbjct: 1141 KCSVKMEASFVDGTNLVMVWITQDKASENCYDESECSMEISNQVPFGFEEVKNEETCE 1198
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 610 IKIWDL-RSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGS 750
+KIW L R K A + G + A C+ H T +I+ GS +
Sbjct: 105 VKIWKLSRDHSPKLATEIDVGGGNVIAECLRAHSTADNILAVGSHGST 152
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 610 IKIWDL-RSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGS 750
+KIW L R K A + G + A C+ H T +I+ GS +
Sbjct: 105 VKIWKLSRDHSPKLATEIDVGGGNVIAECLRAHSTADNILAVGSHGST 152
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 610 IKIWDL-RSEVDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESGS 750
+KIW L R K A + G + A C+ H T +I+ GS +
Sbjct: 105 VKIWKLSRDHSPKLATEIDVGGGNVIAECLRAHSTADNILAVGSHGST 152
>AF047651-2|AAL13318.1| 486|Caenorhabditis elegans Hypothetical
protein C05D2.10b protein.
Length = 486
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +1
Query: 475 DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPA 651
D N+ +GEV + G +S H + V+T + ++WD R + A
Sbjct: 301 DRTANVWDVEKGEVVNILSGHESELNHCSTHSNQKLVLTSSKDSTFRLWDFREAIQSVA 359
>AF047651-1|AAK67207.1| 484|Caenorhabditis elegans Hypothetical
protein C05D2.10a protein.
Length = 484
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +1
Query: 475 DGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPA 651
D N+ +GEV + G +S H + V+T + ++WD R + A
Sbjct: 299 DRTANVWDVEKGEVVNILSGHESELNHCSTHSNQKLVLTSSKDSTFRLWDFREAIQSVA 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,658,670
Number of Sequences: 27780
Number of extensions: 397943
Number of successful extensions: 1120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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