Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0212
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   1.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 526 LYG*LHPFGHSICSHCH--PHQY 464
           +YG LH FGH   S+ H   H+Y
Sbjct: 360 VYGDLHNFGHVAISYIHDPDHRY 382


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 451 GDIASIGEDGNVNILSG 501
           G I ++G DGN NI  G
Sbjct: 460 GKIVTVGSDGNANIEIG 476


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = +1

Query: 274 QIKFTEKNKIAVSISNGDVKILEIS---AYDKQTPLKEIFSWKSLHNYGNTKCSATSLDT 444
           + K  E  ++A S     VK   IS       + P+K    WKS+   G T     ++  
Sbjct: 408 EYKMYELGELASSFVGPKVKDCLISWNPLMQPKQPIKLFEQWKSILESGTTTLQTRTMHP 467

Query: 445 YE 450
           Y+
Sbjct: 468 YD 469


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 415 TKCSATSLDTYEG 453
           TKC AT+ +TY G
Sbjct: 563 TKCKATNEETYRG 575


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 415 TKCSATSLDTYEG 453
           TKC AT+ +TY G
Sbjct: 563 TKCKATNEETYRG 575


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 415 TKCSATSLDTYEG 453
           TKC AT+ +TY G
Sbjct: 563 TKCKATNEETYRG 575


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 343 ISAYDKQTPLKEIFSW 390
           I + DKQ  L EI++W
Sbjct: 518 IESPDKQLTLNEIYNW 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,264
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)