Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0212
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30840.1 68417.m04375 WD-40 repeat protein family 46 3e-05
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 46 3e-05
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 35 0.067
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 34 0.12
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 31 0.82
At1g26330.1 68414.m03211 hypothetical protein 31 0.82
At4g10845.1 68417.m01766 hypothetical protein 31 1.1
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 31 1.1
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 31 1.1
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 1.1
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 30 1.4
At3g07730.1 68416.m00933 expressed protein 30 1.4
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 30 1.4
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 2.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.5
At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein 29 3.3
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 29 3.3
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 4.4
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 28 7.7
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 28 7.7
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 28 7.7
>At4g30840.1 68417.m04375 WD-40 repeat protein family
Length = 361
Score = 46.0 bits (104), Expect = 3e-05
Identities = 50/241 (20%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Frame = +1
Query: 88 SQKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYP-----RALTKY 252
S+ ++ VRW+P+ A + F T S+D + + ++ +S++ + + +L+ +
Sbjct: 16 SKYVDGVRWLPQASALNRFFATASYDADCDSSSI-EIQSLDPNPRGNHNTNPLIESLSSW 74
Query: 253 PVDDDVTQIKFTE--------KNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNY 408
V+ ++ K ++ + S+G + +L I + ++E ++ + +
Sbjct: 75 TSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAA-IEEFYAAEGERFH 133
Query: 409 GNTKCSATSLDTYEG-DIASIGEDGNVNILSGRRGEVNRTIKGADSCSL---HSICYLKH 576
+D EG + ++GEDG VN++ GE R K D L ++ +
Sbjct: 134 VGR---VEGVDWREGGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVKWASP 190
Query: 577 TEVITGNIRGHIKIWDLRSE---VDKPAASFLLAGDELAATCIINHPTQPHIVLAGSESG 747
TE +TG +++WD R V + ++ I HP++ H +AG SG
Sbjct: 191 TEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRKHTCIAGGSSG 250
Query: 748 S 750
+
Sbjct: 251 T 251
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 46.0 bits (104), Expect = 3e-05
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +1
Query: 247 KYPVDDDVTQIKFT-EKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKC 423
+YP D V +++ T EK K+ V+ N +++ ++ +Y+ P++ S +TK
Sbjct: 37 RYP-DLHVNRLELTPEKGKL-VAACNPHIRLFDLRSYNPHIPVRNFVS--------HTKN 86
Query: 424 SATSLDTYEGDIASIG-EDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNI 600
Y G + G EDG+V I R E R + + + + TE+I+G+
Sbjct: 87 VMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRSVSPVNT-VVLHPNQTELISGDQ 145
Query: 601 RGHIKIWDLRSEV 639
G+I++WDLR+++
Sbjct: 146 NGNIRVWDLRADL 158
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 34.7 bits (76), Expect = 0.067
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 340 EISAYDKQTPLKEIFSWKSL--HNYGNTKCSATSLDTYEGDIASIGEDGNVNILSGRRGE 513
EI ++D T SWK L +NY + + + +AS + G+V I+ +
Sbjct: 81 EIKSFDVHT--LSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADDSGDVKIIDLGQKC 138
Query: 514 VNRTIKGADSCSLHSICYL--KHTEVITGNIRGHIKIWD 624
+ +T++ + S+ ++ + EVITG + + +WD
Sbjct: 139 LYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWD 177
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.9 bits (74), Expect = 0.12
Identities = 28/129 (21%), Positives = 58/129 (44%)
Frame = +1
Query: 247 KYPVDDDVTQIKFTEKNKIAVSISNGDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCS 426
+YP D V +++ T + N +++ ++++ Q + ++ G +C
Sbjct: 32 QYP-DSHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVG-FQCD 89
Query: 427 ATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRG 606
A + Y G EDG V I R + + + + + + TE+I+G+ G
Sbjct: 90 AKWM--YSGS-----EDGTVKIWDLRAPGCQKEYESVAAVNT-VVLHPNQTELISGDQNG 141
Query: 607 HIKIWDLRS 633
+I++WDLR+
Sbjct: 142 NIRVWDLRA 150
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 366 CLFIISTNFKYFYITIRY*NGYFVFFREFYLCNIIIYWILGKGTRIFYLFVFVNTFKSPN 187
C+ + S F++ Y T+ F+FF YLC + + G F++ +F F P
Sbjct: 17 CIHLCSVFFRFLYYTLP---ALFLFFFLLYLC---LSFTTGISYNNFHMCIFSRKFNDPY 70
Query: 186 C 184
C
Sbjct: 71 C 71
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +1
Query: 472 EDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPA 651
E+ V I+ + G V+ K S+ + +I G++ +W + S P
Sbjct: 912 EENAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHWSGPT 971
Query: 652 ASFLLAGDELAATCII---NHPTQPHIVLAGSESG 747
+++ + ++CI+ P PH+V+ + G
Sbjct: 972 EEYVILANPCISSCIMELKKIPKCPHLVIGHNGIG 1006
>At4g10845.1 68417.m01766 hypothetical protein
Length = 164
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 109 RW--IPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEY 231
RW + ++ E + G+ + +VNL T WT E++ ED+ + +
Sbjct: 17 RWRAVRDEVTEEAVVVAGNRNKDVNLFTFWTEETLIEDKSLSF 59
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 511 EVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRSEVDKPAASFLLAGDEL 681
E R I A + SL S C++ E ++G+ G + +W + + KP F A ++
Sbjct: 336 ESTRMIYRAPASSLESCCFISDNEYLSGSDNGTVALWGMLKK--KPVFVFKNAHQDI 390
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 424 SATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKH-TEVITGNI 600
+A S+D G + + D G++ T KG S LH++ ++++TG+
Sbjct: 163 NAMSVDPQSGSVFTAAGDSCAYCWDVESGKIKMTFKG-HSDYLHTVVSRSSASQILTGSE 221
Query: 601 RGHIKIWDLRS 633
G +IWD ++
Sbjct: 222 DGTARIWDCKT 232
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 415 TKCSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTE-VIT 591
+ CSA + +AS D N+ I R+ +T KG S + +I + V++
Sbjct: 101 SNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKG-HSRGISTIRFTPDGRWVVS 159
Query: 592 GNIRGHIKIWDL 627
G + +K+WDL
Sbjct: 160 GGLDNVVKVWDL 171
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 406 YGNTK-CSATSLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTE 582
YG++ + + D EG +A+ G + + +V RT+ G S + S+ + E
Sbjct: 149 YGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCV-SVNFHPFGE 207
Query: 583 VI-TGNIRGHIKIWDLRSE 636
+G++ ++KIWD+R +
Sbjct: 208 FFASGSLDTNLKIWDIRKK 226
>At3g07730.1 68416.m00933 expressed protein
Length = 473
Score = 30.3 bits (65), Expect = 1.4
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Frame = +1
Query: 61 SIDIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRA 240
S++ Q + Q+ NKVR + E AET D+V L+ T E + D V R
Sbjct: 149 SLETQQEDIQQRDNKVRKLSESKAET------LRRDDVPLVK--TQEDIQRDNRVAERR- 199
Query: 241 LTKYPVDD----DVTQIKFTEKNKIAVSISNGD--VKILEISAYDK-QTPLKEIFSWKSL 399
K DD DV ++ E ++AV I + + ++ E++ D+ + KE+F +
Sbjct: 200 --KRKCDDALIKDVPLVRTEEDKRVAVEIDHVERVHRVTEVNDVDETSSRSKEVFVGRRK 257
Query: 400 HNYGN 414
N G+
Sbjct: 258 KNEGS 262
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +1
Query: 433 SLDTYEGDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHI 612
++ + G I S +D +V + + ++ +KG DS + + L V+T G +
Sbjct: 904 AISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGHDS-QVSCVKMLSGERVLTAAHDGTV 962
Query: 613 KIWDLRSEV 639
K+WD+R+++
Sbjct: 963 KMWDVRTDM 971
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 676 ELAATCIINHPTQPHIVLAGSESG 747
+L C++ HP QPH+V G+ G
Sbjct: 310 KLRVYCMVAHPLQPHLVATGTNVG 333
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 451 GDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
G + + V+I I S ++HS+C+ + E++ +K+W L
Sbjct: 645 GQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 704
Query: 631 SEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735
S +G++ + ++ HP+ P +++ G
Sbjct: 705 S--GDCIHELSNSGNKFHS--VVFHPSYPDLLVIG 735
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 451 GDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
G + + V+I I S ++HS+C+ + E++ +K+W L
Sbjct: 647 GQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 706
Query: 631 SEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735
S +G++ + ++ HP+ P +++ G
Sbjct: 707 S--GDCIHELSNSGNKFHS--VVFHPSYPDLLVIG 737
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 451 GDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
G + + V+I I S ++HS+C+ + E++ +K+W L
Sbjct: 647 GQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 706
Query: 631 SEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735
S +G++ + ++ HP+ P +++ G
Sbjct: 707 S--GDCIHELSNSGNKFHS--VVFHPSYPDLLVIG 737
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 451 GDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
G + + V+I I S ++HS+C+ + E++ +K+W L
Sbjct: 647 GQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 706
Query: 631 SEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735
S +G++ + ++ HP+ P +++ G
Sbjct: 707 S--GDCIHELSNSGNKFHS--VVFHPSYPDLLVIG 737
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/95 (18%), Positives = 40/95 (42%)
Frame = +1
Query: 451 GDIASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
G + + V+I I S ++HS+C+ + E++ +K+W L
Sbjct: 647 GQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLS 706
Query: 631 SEVDKPAASFLLAGDELAATCIINHPTQPHIVLAG 735
S +G++ + ++ HP+ P +++ G
Sbjct: 707 S--GDCIHELSNSGNKFHS--VVFHPSYPDLLVIG 737
>At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein
Length = 784
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +1
Query: 181 ITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKN-KIAVSISNGDVKILEISAYD 357
+T W+ +VN + + R + P +D + K+ K GD L+++A
Sbjct: 167 LTYWS-PNVNIFRDPRWGRG-QETPGEDPLLASKYASGYVKGLQETDGGDSNRLKVAACC 224
Query: 358 KQTPLKEIFSWKSLHNYG-NTKCSATSL-DTYEGDIASIGEDGNVNILSGRRGEVN 519
K ++ +WK + Y N + + DTY+ S DGNV + +VN
Sbjct: 225 KHYTAYDVDNWKGVERYSFNAVVTQQDMDDTYQPPFKSCVVDGNVASVMCSYNQVN 280
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/94 (29%), Positives = 41/94 (43%)
Frame = -3
Query: 689 VAANSSPASKNDAAGLSTSDRRSQILMWPRMLPVITSVCFK*QMECNEQLSAPLIVRLTS 510
+A +S AS + AA S ++ +L+ P LP + + + LSA L +
Sbjct: 152 LAISSDGASSSSAALSSITESEDSVLVNPPPLPPLP--------DGDNALSASLPLPPLP 203
Query: 509 PLRPLNMFTLPSSPILAMSPSYVSKDVAEHFVLP 408
PL P TLP SP P K+ + FV P
Sbjct: 204 PLPPTTGLTLPHSPFPPPPPGPPPKE--QDFVRP 235
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 28.7 bits (61), Expect = 4.4
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 1/164 (0%)
Frame = +1
Query: 145 FLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSIS-N 321
FL S D I VW + S ++++Y + DD V I F+ +++ S S +
Sbjct: 227 FLASSSVD--GFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQD 284
Query: 322 GDVKILEISAYDKQTPLKEIFSWKSLHNYGNTKCSATSLDTYEGDIASIGEDGNVNILSG 501
G +KI I ++ H+ G T S S D + + S D I
Sbjct: 285 GKIKIWRIRT---GVCIRRF----DAHSQGVTSLSF-SRDGSQ--LLSTSFDQTARIHGL 334
Query: 502 RRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLRS 633
+ G++ + +G S H+I + +IT + +K+WD ++
Sbjct: 335 KSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKT 378
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
+A +G+D + ++ G+ T+KG S S + TGN +IWD R
Sbjct: 292 VAVVGDDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTR 349
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 457 IASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEVITGNIRGHIKIWDLR 630
+A +G+D + ++ G+ T+KG S S + TGN +IWD R
Sbjct: 286 VAVVGDDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTR 343
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 409 GNTKCSATSLDTYEGDI-ASIGEDGNVNILSGRRGEVNRTIKGADSCSLHSICYLKHTEV 585
G+T +T + +G + AS G+DG V + G+ +++ A+S +H++C+ +
Sbjct: 192 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSV-IHALCFSPNRYW 249
Query: 586 ITGNIRGHIKIWDLRSE 636
+ IKIWDL S+
Sbjct: 250 LCAATEHGIKIWDLESK 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,139
Number of Sequences: 28952
Number of extensions: 355797
Number of successful extensions: 979
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -