Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    98   8e-22
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    98   8e-22
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    59   6e-10
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   9.3  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.3  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 48/101 (47%), Positives = 60/101 (59%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 183
           G K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE   
Sbjct: 10  GSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAK 69

Query: 184 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                       IVGA+L  I  KRN +PEVR A R  A+K
Sbjct: 70  KRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 48/101 (47%), Positives = 60/101 (59%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 183
           G K+YPG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE   
Sbjct: 10  GSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAK 69

Query: 184 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                       IVGA+L  I  KRN +PEVR A R  A+K
Sbjct: 70  KRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALK 110


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = +1

Query: 13  IYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 159
           +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   K
Sbjct: 13  VYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 63  EGFSIHFNHGLAMAWIYFVS 4
           +GF  H+  G A+ W+YF +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAA 449


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = +2

Query: 458 PPSNQSQN*CLNMLRQLVKICKKKVKHQEVRKRLFHLXXXXXXXXXXXVEIFFNNVKKKK 637
           P  N   N  L+ML     I K       V K   H            +EIFF+   KK 
Sbjct: 52  PEENAITN--LSMLELATNIAKGNYTSYNVTKAFCHRAALAHQILNCCIEIFFDEALKKA 109

Query: 638 K 640
           K
Sbjct: 110 K 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,765
Number of Sequences: 5004
Number of extensions: 43471
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)