Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    80   2e-15
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    80   2e-15
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    78   5e-15
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    57   1e-08
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.005
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    28   7.2  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXX 180
           G KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E   
Sbjct: 12  GQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVK 71

Query: 181 XXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                        IVGASL  I  KR  KPEVR A RE A++
Sbjct: 72  KRRRTTKKPYSRSIVGASLEVIQKKRAEKPEVRDAAREAALR 113


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4    GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXX 180
            G KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E   
Sbjct: 1022 GQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVK 1081

Query: 181  XXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                         IVGA+L  I  KR+ KPEVR A RE A++
Sbjct: 1082 KRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALR 1123


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXX 180
           G KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E   
Sbjct: 38  GAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVK 97

Query: 181 XXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                        IVGA+L  I  KR  KPEVR A RE A++
Sbjct: 98  KRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAARESALR 139


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = +1

Query: 13  IYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 144
           +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 13  VYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  FTFLNSKCEAAHLMRRNPRKVTWTVLYR 144
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +2

Query: 17  IQAMARPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLE 196
           +  M  PW  W +KPS   I ++ P    G  L++   +  T  S   A  ++    + E
Sbjct: 154 LSKMIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPE 209

Query: 197 GPKSS 211
           GP+S+
Sbjct: 210 GPESA 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,896
Number of Sequences: 37544
Number of extensions: 266394
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)