Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)       138   5e-33
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)       110   8e-25
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)       107   1e-23
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)       107   1e-23
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        107   1e-23
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)       105   3e-23
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)       103   9e-23
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        103   9e-23
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score =  138 bits (333), Expect = 5e-33
 Identities = 65/101 (64%), Positives = 73/101 (72%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 183
           GYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE   
Sbjct: 10  GYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSK 69

Query: 184 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                       + GASL +I+AKRN KPEVRKAQREQAI+
Sbjct: 70  KRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREQAIR 110


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score =  110 bits (265), Expect = 8e-25
 Identities = 53/88 (60%), Positives = 61/88 (69%)
 Frame = +1

Query: 43  KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXI 222
           K  GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               +
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97

Query: 223 VGASLSDIMAKRNMKPEVRKAQREQAIK 306
            GASL +I+AKRN KPEVRKAQREQAI+
Sbjct: 98  QGASLDNILAKRNQKPEVRKAQREQAIR 125


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/83 (62%), Positives = 58/83 (69%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAI 303
           L +I+AKRN KPEVRKAQREQAI
Sbjct: 67  LDNILAKRNQKPEVRKAQREQAI 89


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/83 (62%), Positives = 58/83 (69%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAI 303
           L +I+AKRN KPEVRKAQREQAI
Sbjct: 67  LDNILAKRNQKPEVRKAQREQAI 89


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/83 (62%), Positives = 58/83 (69%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAI 303
           L +I+AKRN KPEVRKAQREQAI
Sbjct: 67  LDNILAKRNQKPEVRKAQREQAI 89


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score =  105 bits (252), Expect = 3e-23
 Identities = 51/84 (60%), Positives = 58/84 (69%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYRR  KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAIK 306
           L +I+AKRN KPEVRKAQREQAI+
Sbjct: 67  LDNILAKRNQKPEVRKAQREQAIR 90


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score =  103 bits (248), Expect = 9e-23
 Identities = 51/83 (61%), Positives = 57/83 (68%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAI 303
           L +I+AKRN KPEVRKAQREQAI
Sbjct: 67  LDNILAKRNQKPEVRKAQREQAI 89


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score =  103 bits (248), Expect = 9e-23
 Identities = 50/83 (60%), Positives = 57/83 (68%)
 Frame = +1

Query: 55  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 234
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 235 LSDIMAKRNMKPEVRKAQREQAI 303
           L +I+AKRN KPEVRK QRE+AI
Sbjct: 67  LDNILAKRNQKPEVRKTQREKAI 89


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = +1

Query: 154 KKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAI 303
           KKG +EE               + GASL +I+AKRN KPEVRKAQREQAI
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQREQAI 51


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 100 MRRNPRKVTWTVLYRR 147
           M+RNPRK+ WT  +R+
Sbjct: 1   MKRNPRKMKWTKAFRK 16


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,984
Number of Sequences: 59808
Number of extensions: 303794
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)