Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071277-1|AAL48899.1|  155|Drosophila melanogaster RE30690p pro...   153   1e-37
AE014134-2347|AAF53299.1|  155|Drosophila melanogaster CG9282-PA...   153   1e-37
AY071693-1|AAL49315.1|  123|Drosophila melanogaster RH14088p pro...    94   1e-19
AY113325-1|AAM29330.1|  191|Drosophila melanogaster AT28833p pro...    56   3e-08
AE014297-1297|AAF54637.1|  191|Drosophila melanogaster CG6764-PA...    56   3e-08
BT010025-1|AAQ22494.1|  594|Drosophila melanogaster RE05480p pro...    28   9.4  
AE014134-1323|AAF52546.3|  596|Drosophila melanogaster CG13795-P...    28   9.4  

>AY071277-1|AAL48899.1|  155|Drosophila melanogaster RE30690p
           protein.
          Length = 155

 Score =  153 bits (372), Expect = 1e-37
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 183
           GYKIYPGHGKTMVK+DGK+FTFL+ KCE ++LM+RNPRKVTWTVLYRRK +KG EEE   
Sbjct: 10  GYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASK 69

Query: 184 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                       IVGASL++I+AKRNMKPEVRKAQR+QAIK
Sbjct: 70  KRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110


>AE014134-2347|AAF53299.1|  155|Drosophila melanogaster CG9282-PA
           protein.
          Length = 155

 Score =  153 bits (372), Expect = 1e-37
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXX 183
           GYKIYPGHGKTMVK+DGK+FTFL+ KCE ++LM+RNPRKVTWTVLYRRK +KG EEE   
Sbjct: 10  GYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASK 69

Query: 184 XXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                       IVGASL++I+AKRNMKPEVRKAQR+QAIK
Sbjct: 70  KRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110


>AY071693-1|AAL49315.1|  123|Drosophila melanogaster RH14088p
           protein.
          Length = 123

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 46/69 (66%), Positives = 52/69 (75%)
 Frame = +1

Query: 100 MRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVR 279
           M+RNPRKVTWTVLYRRK +KG EEE               IVGASL++I+AKRNMKPEVR
Sbjct: 1   MKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVR 60

Query: 280 KAQREQAIK 306
           KAQR+QAIK
Sbjct: 61  KAQRDQAIK 69


>AY113325-1|AAM29330.1|  191|Drosophila melanogaster AT28833p
           protein.
          Length = 191

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +1

Query: 10  KIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 147
           KIYPGHG   V+ D K F F   KC  A   ++NPRKV WT  YR+
Sbjct: 12  KIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRK 57


>AE014297-1297|AAF54637.1|  191|Drosophila melanogaster CG6764-PA
           protein.
          Length = 191

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +1

Query: 10  KIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 147
           KIYPGHG   V+ D K F F   KC  A   ++NPRKV WT  YR+
Sbjct: 12  KIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRK 57


>BT010025-1|AAQ22494.1|  594|Drosophila melanogaster RE05480p
           protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 130 SMLLYEDSSSSNGRLHILNSGM*RFFHPL*PWSCHGL 20
           SML+Y    ++   L I+NS     F P  PWSC GL
Sbjct: 110 SMLIYYSIFAAVPLLFIINS-----FRPTLPWSCEGL 141


>AE014134-1323|AAF52546.3|  596|Drosophila melanogaster CG13795-PA
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 130 SMLLYEDSSSSNGRLHILNSGM*RFFHPL*PWSCHGL 20
           SML+Y    ++   L I+NS     F P  PWSC GL
Sbjct: 110 SMLIYYSIFAAVPLLFIINS-----FRPTLPWSCEGL 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,031,390
Number of Sequences: 53049
Number of extensions: 455840
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)