Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    92   3e-19
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    44   9e-05
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 48/104 (46%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK---GQEEE 174
           GYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K KK   GQE+ 
Sbjct: 10  GYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQV 69

Query: 175 XXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                          + G SL  I+AKRN   + R+ QREQA K
Sbjct: 70  TRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQAAK 113


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +1

Query: 13  IYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 147
           IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 13  IYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 639 FFFFFTLLKKISTFIFFYFFCLLL 568
           FF   T+LK +  F+ F F+CLLL
Sbjct: 102 FFLLRTMLKFLYFFVLFSFWCLLL 125


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = -1

Query: 305 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLYRTVH 126
           ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +   +
Sbjct: 129 VIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDFYKYY 188

Query: 125 VTLRGFLLIKWAASHFEFR 69
           V+    L      S F++R
Sbjct: 189 VSKGNRLRAAQEQSSFDYR 207


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = -1

Query: 305 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLYRTVH 126
           ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +   +
Sbjct: 197 VIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDFYKYY 256

Query: 125 VTLRGFLLIKWAASHFEFR 69
           V+    L      S F++R
Sbjct: 257 VSKGNRLRAAQEQSSFDYR 275


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = -1

Query: 305 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLYRTVH 126
           ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +   +
Sbjct: 191 VIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDFYKYY 250

Query: 125 VTLRGFLLIKWAASHFEFR 69
           V+    L      S F++R
Sbjct: 251 VSKGNRLRAAQEQSSFDYR 269


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 311 TYLMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 156
           T +MA    +   S FIL + I  +    + A W+ + L V FF   ++ PF
Sbjct: 395 TLIMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 636  FFFFTLLKKISTFIFFYFFCL 574
            FFF  LLK  S F+F++ F L
Sbjct: 1648 FFFIFLLKYFSIFLFYFIFLL 1668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,491
Number of Sequences: 27780
Number of extensions: 244586
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)