Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   7.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   7.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 139 YRRKFKKGQEEE 174
           YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 460 WRPFSESK*MVKLFGHW 410
           W P  + K  +KLF  W
Sbjct: 433 WNPLMQPKQPIKLFEQW 449


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 129 PCYFTRIPPHQMGGFTF*IQE 67
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 129 PCYFTRIPPHQMGGFTF*IQE 67
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 129 PCYFTRIPPHQMGGFTF*IQE 67
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 129 PCYFTRIPPHQMGGFTF*IQE 67
           P Y+   PP  MG F   IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 129 PCYFTRIPPHQMGGFTF*IQE 67
           P Y+   PP  MG F   IQE
Sbjct: 340 PVYYGNFPPRPMGPFVS-IQE 359


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 550 SDLLVFHFFFTYFNQL 503
           S +L+ +F F YFN L
Sbjct: 15  SFILINYFIFLYFNSL 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,044
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)