Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0208
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    78   4e-15
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            78   6e-15
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           56   2e-08
At1g05440.1 68414.m00552 expressed protein ; expression supporte...    27   8.0  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQEEEXX 180
           G KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   +E   
Sbjct: 12  GQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVK 71

Query: 181 XXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                        IVGA+L  I  KR  KPEVR A RE A++
Sbjct: 72  RRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALR 113


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   GYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK-GQEEEXX 180
           G KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   +E   
Sbjct: 12  GQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVK 71

Query: 181 XXXXXXXXXXXXXIVGASLSDIMAKRNMKPEVRKAQREQAIK 306
                        IVGA+L  I  KR  KPEVR A RE A++
Sbjct: 72  RRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALR 113


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 30/54 (55%)
 Frame = +1

Query: 13  IYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 174
           IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    K   ++
Sbjct: 13  IYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKD 66


>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 491 LGISFGFDWRVETIFREQINGEVI 420
           LG+  GF W +E +F+ +   E++
Sbjct: 176 LGLELGFSWVLEEVFKPEFTEEIV 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,749
Number of Sequences: 28952
Number of extensions: 226571
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)