Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0207
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    27   0.13 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.38 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.89 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.6  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    23   2.1  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   6.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.3  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.3  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 229 SPLALLAQTCSAIGADAPNPKLISAAEKASKKYDDKPIHTDNKPSFKPYESCLTSREKTR 408
           +PLA+LA  C+ +   +P P   +A  K    +   P    + PS  P  S  T R  T 
Sbjct: 35  TPLAMLAAQCNKLSNKSPPPLADAAVGKGFHPWKKSPQGAPS-PSSTP-SSLPTQRTSTS 92

Query: 409 TP 414
            P
Sbjct: 93  NP 94


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 563 SEKSDERSSPL--QMSPTPAKSNADAIITSSASKLSYT 670
           S K   +S+P+  + SPTP   N +   +SSAS  S T
Sbjct: 140 SSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVT 177


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 653  SKLSYTPTSLSSHTETKETSS 715
            +K SY P S ++H +TK T+S
Sbjct: 1170 TKPSYRPPSTTNHWQTKTTTS 1190


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = +2

Query: 542 PANRKTPSEKSDERSSPLQMSP-----TPAKSNADAIITSSASKLSYTPTSLSSHTETKE 706
           P   + PS  S + S P+Q +P      P KS +    T++ S     P    S+ + + 
Sbjct: 410 PEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEV 469

Query: 707 TSSFKP 724
             S  P
Sbjct: 470 DGSVAP 475


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 702 LVSVWDDKEVGVYDNLEADEVI 637
           L +VW ++    YDN+  DE++
Sbjct: 11  LGAVWCEQYTTKYDNINVDEIL 32


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 696 SVWDDKEVGVYDNLEADEVI 637
           S  DDK    YDN++ D ++
Sbjct: 28  STRDDKYTTRYDNVDVDRIL 47


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 208  TTLDAKKSPLA---LLAQTCSAIGADAPNPKLISAAEKASKKYDDKPIHTDNKPSFKP 372
            T  D  ++P+A   L+  T S + +  P  +     E  +  Y  KP+ TD+K   KP
Sbjct: 1196 TEQDVPEAPIAVKALVMSTDSILASWKPPVEPNGIVEYYTVYY--KPVSTDDKTEVKP 1251


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 163 SSNQYLRPDYLSPLPTTLDAKKSP 234
           S +QY     L P PT  +A  SP
Sbjct: 180 SPDQYQSYQILLPTPTCSEASSSP 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,431
Number of Sequences: 336
Number of extensions: 4364
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)