Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0207
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 31 0.77
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 31 1.0
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 31 1.0
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 31 1.3
01_01_0606 - 4503620-4504060 31 1.3
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 3.1
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 29 4.1
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 29 5.4
10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139 28 7.2
08_02_1448 - 27168389-27172021 28 7.2
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 28 7.2
06_01_1180 + 10141850-10141959,10142096-10142621 28 7.2
10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371... 28 9.5
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 28 9.5
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 9.5
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 28 9.5
04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437... 28 9.5
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Frame = +2
Query: 482 PPVQARCGXXXXXXXXXXXPPANRKTPSEKSDERSSPLQMSPTPAKSN--ADAIITSSAS 655
PP A+ P N PSE+ SP++ SP PA+ + + + S
Sbjct: 983 PPSPAKSTPPPEKPLPPHTPTINSSPPSEEEYMPPSPVKSSPPPAEKSQPPPSPVESVLP 1042
Query: 656 KLSYTPTSLSSHTETKETSSFKPSIPV 736
+ +P +E T S P +PV
Sbjct: 1043 PVKSSPPHAPVISEPPPTKSSPPQVPV 1069
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 133 DSGLWGNMLTSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEK 312
D LW +L N+Y R + T L KSP + A + + AD P+ +LI EK
Sbjct: 966 DGDLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPH-ELIELLEK 1024
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 133 DSGLWGNMLTSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEK 312
D LW +L N+Y R + T L KSP + A + + AD P+ +LI EK
Sbjct: 966 DGDLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPH-ELIELLEK 1024
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 587 SPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSI-PVDVVRFSRRP 763
SP+++SP+ A SN D +A + +P L S ET +T + + P VV S R
Sbjct: 117 SPVEVSPSEASSNLD-----TAGAIGGSPLMLESLPETSDTRGCEQEVMPGVVVGSSNRD 171
Query: 764 AS 769
AS
Sbjct: 172 AS 173
>01_01_0606 - 4503620-4504060
Length = 146
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +2
Query: 557 TPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKP 724
TP+ K +SPL +P PA S+AS TPT S+ TE K T++ P
Sbjct: 59 TPARKRTAAASPLGATPAPAPERKG---MSAASLPGATPTPTSA-TERKGTTAASP 110
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 545 ANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKP 724
AN + S +S L SP+PA S A + SAS S P + S + T+S P
Sbjct: 604 ANAQDLLPGSPSATSSLSSSPSPAPSPDSATASRSASPTSARPATSSWTCTSAATASASP 663
Query: 725 S 727
+
Sbjct: 664 A 664
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSP---LQMSPTPAKSNADAIITSS 649
PP + K+PS+KS E +SP + P+ K++ D ++ S
Sbjct: 575 PPVSPKSPSKKSSEAASPGGRTRTKPSQGKNHRDNEVSKS 614
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 494 LAPEVFEELPFDERGDL 444
+APEV E LP+D+R D+
Sbjct: 414 MAPEVIEHLPYDQRADV 430
>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
Length = 287
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
PP N + + ++ ++ PAK N+DA SA K + P+S S +TK T +
Sbjct: 226 PPPNDPAAARMNSGSNAGIRAPKEPAKRNSDAFSDLSAMKQN-LPSSTES-AQTKSTGA 282
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 137 LSLSSLKTIIIHTQK*TLHSVLSAHVTT 54
LSL+SL+T++I HSV+S HV T
Sbjct: 585 LSLASLRTLVIEKGIFHYHSVMSNHVIT 612
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTE 697
PPA TPS ++D+ P + T S+A + SS S PT+ S E
Sbjct: 61 PPARAATPSSQADD--VPTTTTATSPPSSAPSSPPSSPPAESVPPTAADSELE 111
>06_01_1180 + 10141850-10141959,10142096-10142621
Length = 211
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 214 LDAKKSPLALLAQTCSAIGADAPNPKLISAAEKASKKYDDKPIHTDNKPSFKP 372
+DA PL ++ S GA AP+P +++ A + + D+KP +P
Sbjct: 125 IDAVLMPLDVVVNVSSGGGAAAPSPAPVTSPAPAPAQATNPSPSPDSKPDNQP 177
>10_08_0006 -
14035990-14036135,14036246-14036339,14036845-14037176,
14038040-14038094,14038682-14038750,14038940-14039039,
14039212-14039255,14039705-14039873,14040262-14040333,
14040439-14040519,14040586-14040650,14040796-14041260
Length = 563
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 602 SPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVDVVRFSRRPAS 769
+P+P+ S A + +S K P+SLS T ++ + PS P RP+S
Sbjct: 6 APSPSHSGATSGGGASHRKRKLPPSSLSDATADEDDDTTAPSSPSTSPSSPSRPSS 61
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 537 HHPQIAKRRRKSQTKGRVLFKCRPRRPNQTQTQLSLHLLPSYRIHLLLCR-PTLKPKKLQ 713
HH + + R + T G V C P R ++ L + + H L + TLK K LQ
Sbjct: 615 HHSRAGQFRDQCTTSGNVYDLCSPARQLNQRSSLDHEITEASPTHPLEGKSTTLKAKLLQ 674
Query: 714 A 716
A
Sbjct: 675 A 675
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 539 PPANRKTPS-EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETS 712
PPA R+ +SD SP+ P K A II S+S + T S++ T+
Sbjct: 1606 PPAKRRRGRPRRSDASLSPVTAPPNTGKQEAGTIIDGSSSAPTTTIHSVAPDVTIDSTA 1664
>04_04_1466 - 33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 510 IRALHL-KGLHHPQIAKRRRKSQTKGRVLFKCR-PRRPNQTQTQLSLHLL 653
IR +HL KG+ + + + SQ K F + PR P + +SLHLL
Sbjct: 876 IRLIHLRKGIGQEEAFQIQNSSQKKIEDTFDFKMPRHPCEAMCGISLHLL 925
>04_04_0820 -
28342925-28343092,28343194-28343232,28343664-28343729,
28343847-28343918,28344008-28344127,28344207-28344752
Length = 336
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 217 DAKKSPLALLAQTCSAIGADAPNPKL--ISAAEKASKKYDDKPIHTDNKP 360
D ++ + LA++CS+ G+D KL + KA KK+ + H+ + P
Sbjct: 173 DTREQEITRLARSCSSSGSDRNKKKLSEVRGGGKA-KKFKSETSHSTSSP 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,110,678
Number of Sequences: 37544
Number of extensions: 481967
Number of successful extensions: 1585
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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