Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0207
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 37 0.016
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 34 0.11
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 30 2.4
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 30 2.4
SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 3.2
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 3.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_13224| Best HMM Match : Calx-beta (HMM E-Value=4.7e-09) 29 5.5
SB_51869| Best HMM Match : Calx-beta (HMM E-Value=2.4e-41) 29 5.5
SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31) 29 5.5
SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0) 29 5.5
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 28 7.3
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 28 7.3
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 7.3
SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037) 28 7.3
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_13087| Best HMM Match : THAP (HMM E-Value=0.63) 28 7.3
SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4) 28 9.6
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4) 28 9.6
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 28 9.6
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 28 9.6
>SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 154 MLTSSNQYLRPDYLSPLPTTLDA-KKSPLALLAQTCSAIGADAPNPKLISAAEKASKKYD 330
MLT S +Y+ PLP + KKSPLALLA TCS+IG P AE +K
Sbjct: 236 MLTQSVAKCGQEYIQPLPLKEEEQKKSPLALLAATCSSIGKTEPT----KTAETDNKNSL 291
Query: 331 DKPIHTDN-KPSFKPYESCLTSREKT 405
I++D+ + SFKPY+ E+T
Sbjct: 292 PNKINSDDTRSSFKPYQHSTDKTEET 317
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 187 DYLSPLPTTLDAKKSPLALLAQTCSAI--GADAPNPKLISA 303
DY+ P +T + + SPLALLA TCS I G DA + SA
Sbjct: 12 DYIQPSQSTQEIQPSPLALLAATCSKIGQGTDAAGEPIQSA 52
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 554 KTPSEKSDERSSP-LQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSI 730
K S + +R+SP + SPTP++S + + I SS+ LS P+ + H ET+ T KP +
Sbjct: 269 KHESAHNCKRASPSARSSPTPSESPSLSKIPSSSKTLS--PSKIFEHNETEPTVEKKPKM 326
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 560 PSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIP 733
PS + ++P Q +PTP + A ++ + + TPT+ + T T TS+ P
Sbjct: 39 PSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTP 96
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
P NR PSEK+ ++ L PT A + A+ T + T T++ +T +TS
Sbjct: 524 PIINRPKPSEKAQDKIDTLTPKPTVASRPSPAVTTVTPPSPVATTTAVKRKADT-QTSGT 582
Query: 719 K 721
K
Sbjct: 583 K 583
>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1501
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 130 KDSGLWGNMLTSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAE 309
+D LW ++L +NQY R + T L + P + + + AD PN +LI E
Sbjct: 742 RDPELWASVLLETNQYRRQLIDQVVQTALSETQDPEDVSCTVKAFMTADLPN-ELIELLE 800
Query: 310 K 312
K
Sbjct: 801 K 801
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 557 TPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPV 736
T + + E +S L ++PT + ++ SSASK++YT SS E K P+
Sbjct: 1602 TGASQPGEGTSRLALTPTGPALMSPSMRDSSASKIAYTSAGQSSSWGQDEAKPSKVVSPI 1661
Query: 737 DVVR 748
+ V+
Sbjct: 1662 NNVK 1665
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 560 PSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETK-ETSS 715
P + S+ + SP P+ SN+ +++ SKLS T T + + ETK ET S
Sbjct: 108 PGMQESPASTTEESSPKPSSSNSSSVV----SKLSTTSTYVQAKAETKSETLS 156
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 184 PDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAA--EKASKKYDDKPIHTDNK 357
PDY++ LP T + + + L ++ I D P P + AA ++ + KP+ +NK
Sbjct: 384 PDYVNALPRTAEQQ---IDLPSKAKGPIH-DGPKPGSVQAARAKRTALPVPQKPLDKENK 439
Query: 358 PSF 366
P+F
Sbjct: 440 PTF 442
>SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 304 AEKASK--KYDDKPIHTDNKPSFKPYESCLTSREKTRTPEDRA 426
A KA K K+ DKPIH +PS K ES + + DRA
Sbjct: 57 ANKAFKGVKFGDKPIHATKRPSSKSQESTQSVTQPKVRRLDRA 99
>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +1
Query: 223 KKSPLALLAQTCSAIGADAPNPKLISAAEKASKKY 327
K SPLALLA TCS IG P L +E K Y
Sbjct: 121 KPSPLALLAATCSRIG--QPGSVLPELSEYHGKLY 153
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 274 DAPNPKLISAAE-KASKKYDDKPIHTD-NKPSFKPYESCLTSREKTRTPEDRASVNTHAK 447
D P K E K K +DKP NKP K S TSR+ ++ + S+N K
Sbjct: 28 DKPEDKSEDRLEDKPEDKLEDKPKENQQNKPEDKQQTSPKTSRKTSKKTSQKTSLNASRK 87
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMS--PTPAKSNADAIITSSASKLSYT-PTSLSSHTETKET 709
PP R T K + P MS PTP K + D TS+ +L T PT+ + K+
Sbjct: 133 PPPYRTTAKPKGPTKKPPPMMSLTPTPKKKHYD---TSALEELLGTPPTAKPTKAPNKKP 189
Query: 710 SSFKPSIP 733
KP+ P
Sbjct: 190 VPKKPAPP 197
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
PP S +S +R SP ++ +PA+S + + S S +P +T++ +
Sbjct: 662 PPRRTSRWSSQSPDRRSPARIKSSPARSRSRSQSASPRHSKSKSPALSKVQVKTEKKTPS 721
Query: 719 KPSIPVDVVRFSRRPA 766
P I + S P+
Sbjct: 722 PPPIKKTIGSASPPPS 737
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Frame = +2
Query: 395 EKRQEPRKTELL*ILTP---NHLFRRREALQTPPVQARCGXXXXXXXXXXXPPANRKTPS 565
+K+ PR+T LL T RR ++ R P +R TP
Sbjct: 151 KKKTPPRRTNLLEAFTAAAGTPAGSRRSSISPASPALRSSLGSLAPTSRTSTPTSRSTPR 210
Query: 566 EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKET 709
+S R+ TP+ + + IT+S S+ S ++ TK T
Sbjct: 211 SRSRSRARTPSTPSTPSTPSTPSTITTS-SRASSRGSARGGAKTTKTT 257
>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 593 LQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS 727
LQ+S T NAD +T S S + T + S +T ET +F PS
Sbjct: 169 LQLSKT---DNADIPLTVSVSTANLTAYTPSDYTAISETITFAPS 210
>SB_13224| Best HMM Match : Calx-beta (HMM E-Value=4.7e-09)
Length = 113
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 593 LQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS 727
LQ+S T NAD +T S S + T + S +T ET +F PS
Sbjct: 21 LQLSKT---DNADIPLTVSVSTANLTAYTPSDYTAISETITFAPS 62
>SB_51869| Best HMM Match : Calx-beta (HMM E-Value=2.4e-41)
Length = 358
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 593 LQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS 727
LQ+S T NAD +T S S + T + S +T ET +F PS
Sbjct: 231 LQLSKT---DNADIPLTVSVSTANLTAYTPSDYTAISETITFAPS 272
>SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)
Length = 469
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +2
Query: 551 RKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSI 730
R PS KS + PL +P DAI+ A S P S + H S +PS+
Sbjct: 196 RYYPSWKSTVQVLPLLEIHSPGIGFLDAILHDQAPACSSIPFSTTKHPPVHRYHSLRPSM 255
>SB_40134| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 517
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 593 LQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS 727
LQ+S T NAD +T S S + T + S +T ET +F PS
Sbjct: 425 LQLSKT---DNADIPLTVSVSTANLTAYTPSDYTAISETITFAPS 466
>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 566 EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVDVV 745
E S PL +P S +ITS+ S S + +E+KET +P PV+ V
Sbjct: 363 ESSGVAGKPLPSTPKQRTSTEIPVITSAPSSQSAEKPERRTSSESKET---RPRSPVEKV 419
Query: 746 R 748
+
Sbjct: 420 K 420
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Frame = +2
Query: 437 LTPNH--LFRRREALQTPPVQARCGXXXXXXXXXXXPPANRKTPSEKSDE-----RSSPL 595
LTP+ + + ++++T P PP +R TP +E +P+
Sbjct: 157 LTPSQSSMSQEMDSMETEPTPPPKEMPPQPAEESRTPPGSRSTPEPSLEEPEVSAMGTPV 216
Query: 596 Q------MSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
+P P ++ TSS K S +P+S+++ T T E +S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTSTFEATS 262
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 117 NNNNSHTKINTSLRFVSTCHNFQCTVPFRIFHRR 16
+++ HT ++ SL + H+F+C F + H R
Sbjct: 273 HSSRCHTLVSVSLTLLGVTHSFRCHSLFSVSHTR 306
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 651 LPSYRIHLLLCRPTLKPKKLQASSPAYLWTSSAFLGGL 764
+P+Y + L CR TL ++ + +SP TS+ FL L
Sbjct: 11 VPTYTLPLTSCRLTLPLRRWKIASPWDCATSNCFLANL 48
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +1
Query: 238 ALLAQTCSAIGADAPNPKLISAAEKASKKYDDKPIHTDNKPSFKPYESCLTSREKTRTPE 417
+L A+ AIG D P A +AS + + D P S +SR+ + P
Sbjct: 307 SLQAKQDKAIGTDQPEVTSPRATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPS 366
Query: 418 DRASVNTHAK 447
R+S T ++
Sbjct: 367 PRSSRPTSSR 376
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
P + TP+ S +SP +P+ S A TS++ SY+P S S++ T + S+
Sbjct: 670 PASPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASP--SYSPAS-PSYSPT--SPSY 724
Query: 719 KPSIP 733
P+IP
Sbjct: 725 SPAIP 729
>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
Length = 476
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 638 ITSSASKLSYTPTSLSSHTETKETSSFKPSIP 733
+ S+AS+ SY P+ L H E + + P+IP
Sbjct: 390 LASAASRNSYIPSLLHFHEEIMKAMNIPPTIP 421
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 551 RKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHT 694
+K P K+D ++P TP +S++ + S S P SLSSH+
Sbjct: 72 KKLPVRKADRCNTP---QDTPQRSSSRGLTFQSHKTPSPNPASLSSHS 116
>SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)
Length = 318
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 123 LKNNNN--SHTKINTSLRFVSTCHNFQCTVP 37
+KN + SHT+ T L+ +TCHNF P
Sbjct: 166 MKNRGDLLSHTRATTPLKTDTTCHNFSPKEP 196
>SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)
Length = 487
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 81 LRFVSTCHNFQCTVPFRIFHRRAYHLT 1
LRF +C + +C+V +R +R +++T
Sbjct: 313 LRFARSCISLRCSVVYRCLSKRVHYIT 339
>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
Length = 751
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 184 PDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEKASKKYDDK 336
P LSPLPT L ++S L T +AI NPK ++ + DD+
Sbjct: 371 PMALSPLPTPLATEESDLP-SDVTMAAIVVATANPKAVTLLDSFCVLLDDR 420
>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 623 NADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVD 739
N DA+ +S S+ + PT+ + + S+ KP VD
Sbjct: 103 NLDALFSSKNSRTRFNPTATARRSSLGSLSTHKPVFTVD 141
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +2
Query: 542 PANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLS 664
P +KT + SD+ + SP+ K+++D ++++ A +L+
Sbjct: 240 PVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLN 280
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTS 679
PP K P D ++ P P + +ADA + SK S+ S
Sbjct: 170 PPPPSKPPKTTEDPMDRDWRVGPRPQQRSADAPLPHDPSKESHVTAS 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,457,951
Number of Sequences: 59808
Number of extensions: 563534
Number of successful extensions: 1984
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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