Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0207
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical pr... 36 0.032
AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger p... 36 0.032
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 36 0.042
AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical ... 36 0.042
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 34 0.13
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 34 0.13
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 34 0.13
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 34 0.13
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical pr... 31 0.91
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 0.91
AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormo... 31 0.91
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 30 1.6
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 30 1.6
U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical pr... 30 2.1
U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.1
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 29 4.9
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40801-6|AAO91729.1| 450|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical pr... 29 4.9
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr... 29 4.9
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 4.9
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 4.9
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 28 6.4
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 28 6.4
AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical... 28 6.4
AF016447-7|AAG24007.2| 141|Caenorhabditis elegans Hypothetical ... 28 6.4
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 8.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 8.5
U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical pr... 28 8.5
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 28 8.5
>Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical
protein T23G4.1 protein.
Length = 354
Score = 35.9 bits (79), Expect = 0.032
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 160 TSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEKASK--KYDD 333
T S+QY+ D+ +P+P + KSPLALLA+TC IG + K A+ +S K D+
Sbjct: 4 THSSQYIT-DF-TPVPA--EPGKSPLALLAKTCETIGLPEGSSKKNGASSSSSPQGKKDE 59
Query: 334 K 336
K
Sbjct: 60 K 60
>AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger
protein TLP-1 protein.
Length = 354
Score = 35.9 bits (79), Expect = 0.032
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 160 TSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEKASK--KYDD 333
T S+QY+ D+ +P+P + KSPLALLA+TC IG + K A+ +S K D+
Sbjct: 4 THSSQYIT-DF-TPVPA--EPGKSPLALLAKTCETIGLPEGSSKKNGASSSSSPQGKKDE 59
Query: 334 K 336
K
Sbjct: 60 K 60
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 566 EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVDVV 745
E+ E +S S T +++ TS+++ S TP++ +S T T TSS S P+ V
Sbjct: 512 EEDKEETSTTTSSTTSTEASTPTTSTSTSTSTS-TPSTTTSTTSTSTTSSTSSSAPIRAV 570
Query: 746 RFS 754
R S
Sbjct: 571 RTS 573
>AL132904-1|CAC35832.2| 385|Caenorhabditis elegans Hypothetical
protein Y111B2A.1 protein.
Length = 385
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -1
Query: 539 VKSFEMKSSDYYRT*LAPEVFEELPFDERGDL---A*VFTEALSSGVLVFSLEVKHDS*G 369
+KS E+ + YR APE+F LPF R D+ + +E L +G L+F +HD+
Sbjct: 236 LKSSEVVQTQNYR---APEIFMGLPFSTRSDVWSFGCILSE-LYTGELLFYGNDEHDTEQ 291
Query: 368 LKLGLLSVCIGLSSYFLLAFSAAE 297
L+ L+ + + + +L+ AAE
Sbjct: 292 LQFELMQLILQQAPSYLMMRKAAE 315
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHT--ETKETS 712
P K+P + ++ +SP + TP KS A+ + S +K +P+S + T E+KE S
Sbjct: 1791 PTKKEKSPEKVEEKPASPTKKEKTPEKSAAEEL--KSPTKKEKSPSSPTKKTGDESKEKS 1848
Query: 713 SFKP 724
KP
Sbjct: 1849 PEKP 1852
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHT--ETKETS 712
P K+P + ++ +SP + TP KS A+ + S +K +P+S + T E+KE S
Sbjct: 1791 PTKKEKSPEKVEEKPASPTKKEKTPEKSAAEEL--KSPTKKEKSPSSPTKKTGDESKEKS 1848
Query: 713 SFKP 724
KP
Sbjct: 1849 PEKP 1852
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHT--ETKETS 712
P K+P + ++ +SP + TP KS A+ + S +K +P+S + T E+KE S
Sbjct: 1791 PTKKEKSPEKVEEKPASPTKKEKTPEKSAAEEL--KSPTKKEKSPSSPTKKTGDESKEKS 1848
Query: 713 SFKP 724
KP
Sbjct: 1849 PEKP 1852
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHT--ETKETS 712
P K+P + ++ +SP + TP KS A+ + S +K +P+S + T E+KE S
Sbjct: 1791 PTKKEKSPEKVEEKPASPTKKEKTPEKSAAEEL--KSPTKKEKSPSSPTKKTGDESKEKS 1848
Query: 713 SFKP 724
KP
Sbjct: 1849 PEKP 1852
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -3
Query: 759 LREKRTTSTGMLGLKLEVSLVSVWDDKEVGVYDNLEADEVIIASAFDLAGVGDI 598
L E + + LG+K+ L +V DD+E+ V D L A IA+A D+ DI
Sbjct: 397 LEEMKNKNKARLGIKVTERLPTVSDDEEIDVADMLRAAPP-IANAEDIEDFDDI 449
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -3
Query: 759 LREKRTTSTGMLGLKLEVSLVSVWDDKEVGVYDNLEADEVIIASAFDLAGVGDI 598
L E + + LG+K+ L +V DD+E+ V D L A IA+A D+ DI
Sbjct: 443 LEEMKNKNKARLGIKVTERLPTVSDDEEIDVADMLRAAPP-IANAEDIEDFDDI 495
>Z70753-9|CAA94765.1| 502|Caenorhabditis elegans Hypothetical
protein F40F9.10 protein.
Length = 502
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 600 CRPRRPNQTQTQLSLHLLPSYRIHLLLCRPTLKPK 704
CR P+QT ++ L LLPS R H L LKP+
Sbjct: 252 CRRVCPDQTADRVYLGLLPSCRAHWLAACKALKPE 286
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 548 NRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
+ +T S SDER Q PTP + + + ++SS+S S + + SS + E S
Sbjct: 687 SNETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSSSAPSAEQVS 742
>AF016665-3|AAC71182.3| 330|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 261 protein.
Length = 330
Score = 31.1 bits (67), Expect = 0.91
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 167 VTSI*DRITCRRCRLRSTQKRVLWRYWPR-LAVPSEQTRQTLN*SRPLKRPVKSTTTNLY 343
V S +ITCR CR S + + +++ R + P +Q Q ++ + ++ S+ N
Sbjct: 50 VISCAKKITCRSCRYDSCIRAGMNKFYTRKIKAPKQQVIQEVDRNETFQKSETSSNINYA 109
Query: 344 IPTTSPVSNLTN 379
+ S V NL N
Sbjct: 110 MHGFSKVLNLQN 121
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 557 TPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
T S SSP Q S TPA S+ + SS+ + + T + S T T +
Sbjct: 942 TVSSSQSPTSSPAQQSSTPAGSSTVTVQQSSSFQSPQSTTQIGSSTTVPSTQA 994
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 563 SEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKET 709
S+ +RS ++ +P K + DA++TS+ S T S++S + E+
Sbjct: 63 SQDHRQRSPEVRRHRSPEKESKDAVVTSTGSSRGATSASVTSSSRRHES 111
>U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical
protein T25F10.6a protein.
Length = 406
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 572 SDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVDVVR 748
+DE P P A+ A A +S + + P SL S T ++ +F PSIP V+R
Sbjct: 21 ADENQEPEAEEPE-AEEEAPAPAAASP-RAAAPPASLKSPTPGRQQVNFTPSIPQSVLR 77
>U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical
protein T25F10.6b protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 572 SDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVDVVR 748
+DE P P A+ A A +S + + P SL S T ++ +F PSIP V+R
Sbjct: 21 ADENQEPEAEEPE-AEEEAPAPAAASP-RAAAPPASLKSPTPGRQQVNFTPSIPQSVLR 77
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 548 NRKTPSEKSDERSSPLQMSPTPAKSNADAI---ITSSASKLSYTPTSLSSHTETK-ETSS 715
+R S S E+ + + SP+PAKS A + S + TP+ +S + T+ T+S
Sbjct: 13 SRNAVSAPSSEKKTKMSKSPSPAKSARKASKSPARARTSNVKKTPSRSASKSATRGRTAS 72
Query: 716 FKPSIP 733
P P
Sbjct: 73 KTPKTP 78
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 587 SPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIP 733
SP+ SP+PAK ++A I S + P+ S +TS+ +P P
Sbjct: 591 SPVLRSPSPAKVTSEAAIPESNGVVKPIPSYASQPIGISKTSTPQPFRP 639
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 587 SPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIP 733
SP+ SP+PAK ++A I S + P+ S +TS+ +P P
Sbjct: 591 SPVLRSPSPAKVTSEAAIPESNGVVKPIPSYASQPIGISKTSTPQPFRP 639
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAK 619
P N+K P+EK E+ P ++S P K
Sbjct: 1192 PKLNKKAPAEKPTEKPKPKEVSKEPPK 1218
>U40801-6|AAO91729.1| 450|Caenorhabditis elegans Hypothetical
protein F28E10.1d protein.
Length = 450
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 569 KSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS-IPV 736
K ER +P+ P+P K N ++T S L+ + S T + + KP+ +P+
Sbjct: 107 KETERPAPVFTPPSPPKENPFHVMTVPKSTLTSSSESAMPMTSSSSSIRAKPNQLPI 163
>U40801-5|AAO91727.1| 777|Caenorhabditis elegans Hypothetical
protein F28E10.1b protein.
Length = 777
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 569 KSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS-IPV 736
K ER +P+ P+P K N ++T S L+ + S T + + KP+ +P+
Sbjct: 649 KETERPAPVFTPPSPPKENPFHVMTVPKSTLTSSSESAMPMTSSSSSIRAKPNQLPI 705
>U40801-4|AAO91728.1| 873|Caenorhabditis elegans Hypothetical
protein F28E10.1c protein.
Length = 873
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 569 KSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS-IPV 736
K ER +P+ P+P K N ++T S L+ + S T + + KP+ +P+
Sbjct: 745 KETERPAPVFTPPSPPKENPFHVMTVPKSTLTSSSESAMPMTSSSSSIRAKPNQLPI 801
>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
protein F28E10.1a protein.
Length = 1134
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 569 KSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPS-IPV 736
K ER +P+ P+P K N ++T S L+ + S T + + KP+ +P+
Sbjct: 791 KETERPAPVFTPPSPPKENPFHVMTVPKSTLTSSSESAMPMTSSSSSIRAKPNQLPI 847
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 566 EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKE 706
EK R L P A+++ADA ++SA + TP++ +T E
Sbjct: 336 EKKRRRLEKLGQLPVAAEASADASASASAEASAETPSTTPEQEKTPE 382
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 566 EKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKE 706
EK R L P A+++ADA ++SA + TP++ +T E
Sbjct: 336 EKKRRRLEKLGQLPVAAEASADASASASAEASAETPSTTPEQEKTPE 382
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
PP + D++SSPL + P+PA + + ++ A KLS T + ++ +
Sbjct: 2099 PPTPSIEEEDDPDDKSSPLPLPPSPA--HIQQLPSNLAPKLSQTKAQEAKNSNDTNIQNL 2156
Query: 719 KPSIPV 736
I V
Sbjct: 2157 SRDINV 2162
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 557 TPSEKSD--ERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKE 706
T SE S+ E S + + PAK++ + T++ ++ S S SH +TKE
Sbjct: 204 TSSETSETTEESEEEETTTKPAKTHKSSKTTTTTTEASTKKDSKKSHKKTKE 255
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
PP + D++SSPL + P+PA + + ++ A KLS T + ++ +
Sbjct: 2099 PPTPSIEEEDDPDDKSSPLPLPPSPA--HIQQLPSNLAPKLSQTKAQEAKNSNDTNIQNL 2156
Query: 719 KPSIPV 736
I V
Sbjct: 2157 SRDINV 2162
>AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical
protein Y46G5A.15 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 337 PIHTDNKPSFKPYESCLTSREKTRTPEDRA 426
P H ++P+F P+ S + R + PE+ A
Sbjct: 54 PYHPSSQPAFAPFRSSQSYRPRENEPEEEA 83
>AF016447-7|AAG24007.2| 141|Caenorhabditis elegans Hypothetical
protein C54F6.6 protein.
Length = 141
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 68 LTKRSEVFIFVCELLLFLSWIRIADCGAICSRQVTSI*DRITCRRCRL 211
LTK + IF+C +LL L + AD + ITCR C +
Sbjct: 83 LTKMTSKIIFLCIILLILIQLASADFSCFFGDFICK---HITCRNCEI 127
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 569 KSDERSSPLQMS-PTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSFKPSIPVD 739
K+ E S +Q + P S++ I+ ++ S + TSL + TK S + IP+D
Sbjct: 1125 KAKEAGSQIQAAVPIKPSSSSSNIVNNNVFSSSKSSTSLGTSAPTKSIPSPQIGIPMD 1182
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSS---ASKLSYTPTSLSSHTETKET 709
PPAN T + + S + +I+TS+ A + S +PT+ +HT +
Sbjct: 500 PPANPTTATPTTVGTSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPTTTPTHTTASQP 559
Query: 710 SSFKPSIPVDVV 745
++ KP + + V
Sbjct: 560 TTTKPVVTTNSV 571
>U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical
protein F10C1.5 protein.
Length = 280
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSSF 718
P N +E+ E S + SP+ + + TSS +LS T +S + + F
Sbjct: 124 PTTNNNNNTEEKYEDSQGQRSSPSSPTGSETVVSTSSPPELSSESTPNTSGSVIPTSPVF 183
Query: 719 KPS 727
KP+
Sbjct: 184 KPN 186
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 539 PPANRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSASKL 661
P +++ PS SP Q SP P S+ A +SSA+ L
Sbjct: 326 PIRSQQQPSTPGLSLESPRQKSPNPQNSSQTASASSSAAAL 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,414
Number of Sequences: 27780
Number of extensions: 409901
Number of successful extensions: 1652
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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