Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0207
(773 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 33 0.16
At3g09000.1 68416.m01053 proline-rich family protein 32 0.49
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 31 0.85
At5g61540.1 68418.m07722 L-asparaginase, putative / L-asparagine... 31 1.1
At4g00700.1 68417.m00096 C2 domain-containing protein contains I... 31 1.1
At4g30200.3 68417.m04295 expressed protein contains weak similar... 29 3.4
At4g30200.2 68417.m04294 expressed protein contains weak similar... 29 3.4
At4g30200.1 68417.m04293 expressed protein contains weak similar... 29 3.4
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 29 3.4
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 29 4.5
At1g67740.1 68414.m07730 photosystem II core complex proteins ps... 29 4.5
At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containi... 28 6.0
At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kina... 28 6.0
At3g62050.1 68416.m06971 expressed protein contains Pfam profile... 28 7.9
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 7.9
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 133 DSGLWGNMLTSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEK 312
D LW +LT N+Y R + T L KSP + A + + AD P+ +LI EK
Sbjct: 966 DGDLWEKVLTEENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPH-ELIELLEK 1024
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 563 SEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
S + ++P + S TP S + + T +++ S TPTS ++ T + T+S
Sbjct: 153 SRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTS 203
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 133 DSGLWGNMLTSSNQYLRPDYLSPLPTTLDAKKSPLALLAQTCSAIGADAPNPKLISAAEK 312
D LW +L +N Y R + T L KSP + A + + AD P+ +LI EK
Sbjct: 966 DGDLWDKVLDENNDYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPH-ELIELLEK 1024
>At5g61540.1 68418.m07722 L-asparaginase, putative / L-asparagine
amidohydrolase, putative similar to Swiss-Prot:O02467
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
(Glycosylasparaginase)
(Aspartylglucosaminidase)(N4-(N-acetyl-beta-
glucosaminyl)-L-asparagine amidase) (AGA)[Spodoptera
frugiperda]
Length = 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 77 RSEVFIFVCELLLFLSWIRIADCGAICS 160
RS+V IFV LLLFLS + +AD + S
Sbjct: 3 RSDVLIFVSTLLLFLSLLTVADAELVKS 30
>At4g00700.1 68417.m00096 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1006
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 557 TPSEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
TPS + SP SP+P K + ++IT+ AS + L T T S+
Sbjct: 136 TPSVPTPVPESPQAYSPSPRKEHVKSLITADASMATDERRELKPKTRTFHNSA 188
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 765 AGLREKRTTSTGMLGLKLEVSLVSVWDDKE-VGVYDNLEADEVIIASAFDLAG 610
A R KRTT + ++ ++ +V + + DD+E V D E++ ++ + L G
Sbjct: 509 AAKRMKRTTDSDIVQIEKDVEQIVLLDDEEQEAVLDKTESETPVVVTTKSLVG 561
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 765 AGLREKRTTSTGMLGLKLEVSLVSVWDDKE-VGVYDNLEADEVIIASAFDLAG 610
A R KRTT + ++ ++ +V + + DD+E V D E++ ++ + L G
Sbjct: 521 AAKRMKRTTDSDIVQIEKDVEQIVLLDDEEQEAVLDKTESETPVVVTTKSLVG 573
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 765 AGLREKRTTSTGMLGLKLEVSLVSVWDDKE-VGVYDNLEADEVIIASAFDLAG 610
A R KRTT + ++ ++ +V + + DD+E V D E++ ++ + L G
Sbjct: 492 AAKRMKRTTDSDIVQIEKDVEQIVLLDDEEQEAVLDKTESETPVVVTTKSLVG 544
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 596 QMSPTPAKS-NADAIITSSASKLSYTPTSLSSHTETKETSSFKP 724
QM PTP+ S N+ A ++S++S Y P + S T SSF P
Sbjct: 92 QMIPTPSSSHNSKASVSSASSSSFYFPQTSPSSCST--PSSFSP 133
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 563 SEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETK 703
+++++E +S L A SN+D I T + SK P + TETK
Sbjct: 225 ADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETK 271
>At1g67740.1 68414.m07730 photosystem II core complex proteins psbY,
chloroplast (PSBY) / L-arginine metabolising enzyme
identical to SP:O49347 Photosystem II core complex
proteins psbY, chloroplast precursor (L-arginine
metabolising enzyme) (L-AME) [Contains: Photosystem II
protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
(psbY-A2)] [Arabidopsis thaliana]
Length = 189
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +2
Query: 548 NRKTPSEKSDERSSPLQMSPTPAKSNADAIITSSA------SKLSYTPTSLS 685
N P ++ +S P PTP K N +TS+A S LSY+ +L+
Sbjct: 15 NPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALA 66
>At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 195 VAAADYARRKK-ESSGAIGPDLQCHRS 272
VA D+ +RKK ES G IGP+L + S
Sbjct: 166 VAVVDWLKRKKSESGGVIGPNLFIYNS 192
>At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam profile
PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
Length = 427
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 542 PANRKTPSEKSDERSSPLQMSPTPAKSNA-DAIITSSASKLSYTPTSLSSHTETKETSSF 718
P+ SE S S +SP+PA++NA D+ S SK T+L++ + +++F
Sbjct: 278 PSRNSVDSENSVNIQSVASISPSPAQTNASDSPYESLVSK-----TNLTNIFQNSSSTNF 332
Query: 719 KPSIPVDVVRFSR 757
IP R R
Sbjct: 333 GMKIPGRARRVGR 345
>At3g62050.1 68416.m06971 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 157
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 619 IKRRRNYHFICFQVIVYTYFFVVPH 693
+K ++NY+FI + I+Y Y+ H
Sbjct: 121 LKSKKNYNFIIYNFILYVYYQKTEH 145
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 539 PPANRKTP-SEKSDERSSPLQMSPTPAKSNADAIITSSASKLSYTPTSLSSHTETKETSS 715
P AN TP S +S E S+P+Q +PTP + +A S+ S + + + S +E + +
Sbjct: 832 PMANAPTPSSSESGEISTPVQ-APTPDSEDIEAPSDSNHSPVFKSSPAPSPDSEPEVEAP 890
Query: 716 FKPSIP 733
S P
Sbjct: 891 VPSSEP 896
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,544,859
Number of Sequences: 28952
Number of extensions: 379164
Number of successful extensions: 1342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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